Definition: A step in an ordered pathway. Rationale: Some pathways can have a temporal order. For example, if the pathway boundaries are based on a perturbation phenotype link, the pathway might start with the perturbing agent and end at gene expression leading to the observed changes. Pathway steps can represent directed compound graphs. Usage: Multiple interactions may occur in a pathway step, each should be listed in the stepProcess property. Order relationships between pathway steps may be established with the nextStep slot. If the reaction contained in the step is a reversible biochemical reaction but physiologically has a direction in the context of this pathway, use the subclass BiochemicalPathwayStep. Example: A metabolic pathway may contain a pathway step composed of one biochemical reaction (BR1) and one catalysis (CAT1) instance, where CAT1 describes the catalysis of BR1. The M phase of the cell cycle, defined as a pathway, precedes the G1 phase, also defined as a pathway.
Source:http://www.biopax.org/release/biopax-level3.owl#PathwayStep
| Predicate | Object |
|---|---|
| rdf:type | |
| rdfs:comment |
Definition: A step in an ordered pathway.
Rationale: Some pathways can have a temporal order. For example, if the pathway boundaries are based on a perturbation phenotype link, the pathway might start with the perturbing agent and end at gene expression leading to the observed changes. Pathway steps can represent directed compound graphs.
Usage: Multiple interactions may occur in a pathway step, each should be listed in the stepProcess property. Order relationships between pathway steps may be established with the nextStep slot. If the reaction contained in the step is a reversible biochemical reaction but physiologically has a direction in the context of this pathway, use the subclass BiochemicalPathwayStep.
Example: A metabolic pathway may contain a pathway step composed of one biochemical reaction (BR1) and one catalysis (CAT1) instance, where CAT1 describes the catalysis of BR1. The M phase of the cell cycle, defined as a pathway, precedes the G1 phase, also defined as a pathway.,
Definition: A step in an ordered pathway.
Rationale: Some pathways can have a temporal order. For example, if the pathway boundaries are based on a perturbation phenotype link, the pathway might start with the perturbing agent and end at gene expression leading to the observed changes. Pathway steps can represent directed compound graphs.
Usage: Multiple interactions may occur in a pathway step, each should be listed in the stepProcess property. Order relationships between pathway steps may be established with the nextStep slot. If the reaction contained in the step is a reversible biochemical reaction but physiologically has a direction in the context of this pathway, use the subclass BiochemicalPathwayStep.
Example: A metabolic pathway may contain a pathway step composed of one biochemical reaction (BR1) and one catalysis (CAT1) instance, where CAT1 describes the catalysis of BR1. The M phase of the cell cycle, defined as a pathway, precedes the G1 phase, also defined as a pathway.,
Definition: A step in an ordered pathway.
Rationale: Some pathways can have a temporal order. For example, if the pathway boundaries are based on a perturbation phenotype link, the pathway might start with the perturbing agent and end at gene expression leading to the observed changes. Pathway steps can represent directed compound graphs.
Usage: Multiple interactions may occur in a pathway step, each should be listed in the stepProcess property. Order relationships between pathway steps may be established with the nextStep slot. If the reaction contained in the step is a reversible biochemical reaction but physiologically has a direction in the context of this pathway, use the subclass BiochemicalPathwayStep.
Example: A metabolic pathway may contain a pathway step composed of one biochemical reaction (BR1) and one catalysis (CAT1) instance, where CAT1 describes the catalysis of BR1. The M phase of the cell cycle, defined as a pathway, precedes the G1 phase, also defined as a pathway.
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| owl:disjointWith |
biopax3:BioSource,
biopax3:BioSource,
biopax3:BioSource,
biopax3:ChemicalStructure,
biopax3:ChemicalStructure,
biopax3:ChemicalStructure,
biopax3:ControlledVocabulary,
biopax3:ControlledVocabulary,
biopax3:ControlledVocabulary,
biopax3:DeltaG,
biopax3:DeltaG,
biopax3:DeltaG,
biopax3:EntityFeature,
biopax3:EntityFeature,
biopax3:EntityFeature,
biopax3:EntityReference,
biopax3:EntityReference,
biopax3:EntityReference,
biopax3:Evidence,
biopax3:Evidence,
biopax3:Evidence,
biopax3:ExperimentalForm,
biopax3:ExperimentalForm,
biopax3:ExperimentalForm,
biopax3:KPrime,
biopax3:KPrime,
biopax3:KPrime,
biopax3:Provenance,
biopax3:Provenance,
biopax3:Provenance,
biopax3:Score,
biopax3:Score,
biopax3:Score,
biopax3:SequenceLocation,
biopax3:SequenceLocation,
biopax3:SequenceLocation,
biopax3:Stoichiometry,
biopax3:Stoichiometry,
biopax3:Stoichiometry,
biopax3:Xref,
biopax3:Xref,
biopax3:Xref
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| rdfs:subClassOf |