Sources

Repository overview

ID:LLD 2.0
Description:Linked Life Data is a semantic data integration platform for the biomedical domain.
Number of statements:10,192,505,364
Number of expl. statements:6,706,216,217
Number of entities:1,553,620,636
Data sourceNamed graphLoad dateStatementsInstances type
BioGRID
ReferenceLicense
http://linkedlifedata.com/resource/biogrid2012.07.2014,327,672biopax-2:entity
CellMap
ReferenceLicense
http://linkedlifedata.com/resource/cellmap2012.07.20154,863biopax-2:biochemicalReaction
ChEBI
ReferenceLicense
http://linkedlifedata.com/resource/chebi2012.09.12475,638skos:Concept
ChEMBL
ReferenceLicense
http://linkedlifedata.com/resource/chembl2012.11.21172,179,641 chembl:ChemicalCompound
ClinicalTrials
ReferenceLicense
http://linkedlifedata.com/resource/clinicaltrials2013.01.0225,762,568clinicaltrials:ClinicalStudy
DailyMed
ReferenceLicense
http://linkedlifedata.com/resource/dailymed2012.07.20162,972dailymed:drugs
DiseaseOntology
ReferenceLicense
http://linkedlifedata.com/resource/diseaseontology2012.07.2091,006skos:Concept
Diseasome
ReferenceLicense
http://linkedlifedata.com/resource/diseasome2012.07.2072,445diseasome:diseases
DrugBank
ReferenceLicense
http://linkedlifedata.com/resource/drugbank2012.12.121,039,959drugbank:Drug
GeneOntology
ReferenceLicense
http://linkedlifedata.com/resource/geneontology2012.12.12352,686skos:Concept
HapMap
ReferenceLicense
http://linkedlifedata.com/resource/hapmap2012.07.2022,462,178
HomoloGene
ReferenceLicense
http://linkedlifedata.com/resource/homologene2012.09.1229,435,724homologene:Group
HPRD
ReferenceLicense
http://linkedlifedata.com/resource/hprd2013.01.021,972,499biopax-3:entity
HumanCYC
ReferenceLicense
http://linkedlifedata.com/resource/humancyc2013.01.02332,828biopax-3:entity
HumanPhenotypeOntology
ReferenceLicense
http://linkedlifedata.com/resource/phenotype2012.09.1266,099skos:Concept
IMID
ReferenceLicense
http://linkedlifedata.com/resource/imid2012.07.20117,675biopax-2:entity
IntAct
ReferenceLicense
http://linkedlifedata.com/resource/intact2013.01.022,162,042biopax3:MolecularInteraction
MINT
ReferenceLicense
http://linkedlifedata.com/resource/mint2013.01.028,982,264biopax-3:entity
NCBI Gene
ReferenceLicense
http://linkedlifedata.com/resource/entrezgene2012.12.13235,976,573entrezgene:Gene
NCI Nature
ReferenceLicense
http://linkedlifedata.com/resource/nci-nature2013.01.02914,442biopax-3:entity
PathwayCommons2 BioPax level-3 datasources
ReferenceLicense
http://linkedlifedata.com/resource/biopax32013.01.026,087,970http://www.biopax.org/release/biopax-level3.owl#Pathway
PDB
ReferenceLicense
http://linkedlifedata.com/resource/pdb2012.10.2310,442,629pdb:Structure
Pfam
ReferenceLicense
http://linkedlifedata.com/resource/pfam2012.10.2356,181,920pfam:Family
Pfam-A
ReferenceLicense
http://linkedlifedata.com/resource/pfam-a2012.10.233,267,518pfam:ProteinSequence
Pfam-B
ReferenceLicense
http://linkedlifedata.com/resource/pfam-b2012.10.2318,122,454pfam:ProteinSequence
PubMed
ReferenceLicense
http://linkedlifedata.com/resource/pubmed2012.07.201,454,405,726pubmed:Citation
Reactome
ReferenceLicense
http://linkedlifedata.com/resource/reactome2013.01.021,082,499biopax-3:entity
RxNorm
ReferenceLicense
http://linkedlifedata.com/resource/rxnorm2012.11.2713,286,198skos:Concept
SIDER
ReferenceLicense
http://linkedlifedata.com/resource/sider2012.11.024,054,800sider:Drug
SymptomOntology
ReferenceLicense
http://linkedlifedata.com/resource/symptom2012.07.205,210skos:Concept
UMLS
ReferenceLicense
http://linkedlifedata.com/resource/umls2012.12.0691,851,975skos:Concept
UniProt
ReferenceLicense
http://linkedlifedata.com/resource/uniprot2012.11.284,165,135,149uniprot:Protein

Instance mappings

Source datasetDestination datasetLinked Data Mapping RuleNumber of connectionsSemantic relationship
BioPax proteinsNCBI-Gene genesReference node907skos:closeMatch
BioPax proteinsUniProt proteinsReference Node1,220skos:relatedMatch
Diseasome genesNCBI-Gene genesReference Node1,776skos:relatedMatch
DrugBank targetsUniProt proteinsNamespace Mapping4,660skos:exactMatch
DrugBank targetsNCBI-Gene genesNamespace Mapping1,617skos:relatedMatch
HGNC genesNCBI-Gene genesNamespace mapping27,558skos:exactMatch
HomologeneNCBI GeneNamespace mapping203,525skos:exactMatch
HUGO citationsPubMed citationsNamespace Mapping15,039skos:relatedMatch
HUGO GenesUniProt proteinsNamespace Mapping18,996skos:relatedMatch
LHGDN associationUMLS conceptsNamespace Mapping63,148lhgdn:umls_code
NCBI-Gene organismsUMLS organismsMismatched Identifiers6,720skos:exactMatch
PDBUniProtReference node16,944skos:exactMatch
PfamPDBReference node5,357skos:closeMatch
PubMed Mesh termsUMLS Mesh termsValue Dereference25,969skos:exactMatch
RxNormUMLSReference node25,581skos:exactMatch
SIDER drugsUMLS drug recordsNamespace Mapping1,684skos:exactMatch
UniProt organismsUMLS organism recordsValue Dereference634,181skos:exactMatch
UniProt proteinsUMLS protein recordsReference Node19,261skos:exactMatch

Predicate mappings

Source datasetDestination datasetLinked Data Mapping RuleNumber of connectionsSemantic relationship