Source:http://linkedlifedata.com/resource/pubmed/id/15529173
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| Predicate | Object |
|---|---|
| rdf:type | |
| lifeskim:mentions | |
| pubmed:issue |
11
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| pubmed:dateCreated |
2004-11-5
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| pubmed:abstractText |
A broad range of mass spectrometers are used in mass spectrometry (MS)-based proteomics research. Each type of instrument possesses a unique design, data system and performance specifications, resulting in strengths and weaknesses for different types of experiments. Unfortunately, the native binary data formats produced by each type of mass spectrometer also differ and are usually proprietary. The diverse, nontransparent nature of the data structure complicates the integration of new instruments into preexisting infrastructure, impedes the analysis, exchange, comparison and publication of results from different experiments and laboratories, and prevents the bioinformatics community from accessing data sets required for software development. Here, we introduce the 'mzXML' format, an open, generic XML (extensible markup language) representation of MS data. We have also developed an accompanying suite of supporting programs. We expect that this format will facilitate data management, interpretation and dissemination in proteomics research.
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| pubmed:grant | |
| pubmed:language |
eng
|
| pubmed:journal | |
| pubmed:citationSubset |
IM
|
| pubmed:chemical | |
| pubmed:status |
MEDLINE
|
| pubmed:month |
Nov
|
| pubmed:issn |
1087-0156
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| pubmed:author |
pubmed-author:AebersoldRuediR,
pubmed-author:AngelettiRuth HRH,
pubmed-author:ApweilerRolfR,
pubmed-author:CheungKeiK,
pubmed-author:CostelloCatherine ECE,
pubmed-author:DeutschEric WEW,
pubmed-author:EngJimmy KJK,
pubmed-author:HermjakobHenningH,
pubmed-author:HuangSequinS,
pubmed-author:HubleyRobertR,
pubmed-author:JulianRandall KRK,
pubmed-author:KappEugeneE,
pubmed-author:McCombMark EME,
pubmed-author:NilssonErikE,
pubmed-author:OliverStephen GSG,
pubmed-author:OmennGilbertG,
pubmed-author:PatonNorman WNW,
pubmed-author:PedrioliPatrick G APG,
pubmed-author:PrattBrianB,
pubmed-author:RaughtBrianB,
pubmed-author:SimpsonRichardR,
pubmed-author:SmithRichardR,
pubmed-author:TaylorChris FCF,
pubmed-author:VogelzangMathijsM,
pubmed-author:ZhuWeiminW
|
| pubmed:issnType |
Print
|
| pubmed:volume |
22
|
| pubmed:owner |
NLM
|
| pubmed:authorsComplete |
Y
|
| pubmed:pagination |
1459-66
|
| pubmed:dateRevised |
2007-11-14
|
| pubmed:meshHeading |
pubmed-meshheading:15529173-Database Management Systems,
pubmed-meshheading:15529173-Databases, Factual,
pubmed-meshheading:15529173-Information Dissemination,
pubmed-meshheading:15529173-Information Storage and Retrieval,
pubmed-meshheading:15529173-Mass Spectrometry,
pubmed-meshheading:15529173-Proteome,
pubmed-meshheading:15529173-Proteomics,
pubmed-meshheading:15529173-Software,
pubmed-meshheading:15529173-User-Computer Interface
|
| pubmed:year |
2004
|
| pubmed:articleTitle |
A common open representation of mass spectrometry data and its application to proteomics research.
|
| pubmed:affiliation |
Institute for Systems Biology, 1441 North 34 Street, Seattle, Washington 98103-8904, USA.
|
| pubmed:publicationType |
Journal Article,
Research Support, U.S. Gov't, P.H.S.,
Evaluation Studies
|