Predicate | Object |
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rdf:type | |
biopax3:comment |
FUNCTION: Type V collagen is a member of group I collagen (fibrillar forming collagen). It is a minor connective tissue component of nearly ubiquitous distribution. Type V collagen binds to DNA, heparan sulfate, thrombospondin, heparin, and insulin (By similarity). Transcriptionally activated by CEBPZ, which recognizes a CCAAT-like motif, CAAAT in the COL5A1 promoter. SUBUNIT: Trimers of two alpha 1(V) and one alpha 2(V) chains in most tissues and trimers of one alpha 1(V), one alpha 2(V), and one alpha 3(V) chains in placenta. Interacts with CSPG4 (By similarity). SUBCELLULAR LOCATION: Secreted, extracellular space, extracellular matrix (By similarity). TISSUE SPECIFICITY: Expressed in limbs, vertebrae, heart, brain, liver, intestine, tongue, tail, skin, calvaria, lung and kidney of E18 embryos. DEVELOPMENTAL STAGE: Detected at E11, E12, E14, E16 and E18. PTM: Hydroxylation on proline residues within the sequence motif, GXPG, is most likely to be 4-hydroxy as this fits the requirement for 4-hydroxylation in vertebrates (By similarity). PTM: Sulfated on 40% of tyrosines (By similarity). SIMILARITY: Belongs to the fibrillar collagen family. SIMILARITY: Contains 1 fibrillar collagen NC1 domain. SIMILARITY: Contains 1 laminin G-like domain. GENE SYNONYMS:Col5a1. COPYRIGHT: Protein annotation is derived from the UniProt Consortium (http://www.uniprot.org/). Distributed under the Creative Commons Attribution-NoDerivs License.,
SEQUENCE 1838 AA; 183677 MW; D20F4E5198A09ECF CRC64;
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biopax3:xref |
urn:biopax:RelationshipXref:MOUSE GENOME DATABASE_MGI:88457,
urn:biopax:RelationshipXref:NCBI GENE_12831,
urn:biopax:RelationshipXref:REFSEQ_NP_056549,
urn:biopax:UnificationXref:UNIPROT_A3KGE3,
urn:biopax:UnificationXref:UNIPROT_O88207,
urn:biopax:UnificationXref:UNIPROT_Q3UG94,
urn:biopax:UnificationXref:UNIPROT_Q6F6B0
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biopax3:displayName |
CO5A1_MOUSE
|
biopax3:name |
Col5a1
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biopax3:entityFeature |
urn:biopax:ModificationFeature:CO5A1_MOUSE_1,
urn:biopax:ModificationFeature:CO5A1_MOUSE_10,
urn:biopax:ModificationFeature:CO5A1_MOUSE_11,
urn:biopax:ModificationFeature:CO5A1_MOUSE_12,
urn:biopax:ModificationFeature:CO5A1_MOUSE_13,
urn:biopax:ModificationFeature:CO5A1_MOUSE_14,
urn:biopax:ModificationFeature:CO5A1_MOUSE_15,
urn:biopax:ModificationFeature:CO5A1_MOUSE_16,
urn:biopax:ModificationFeature:CO5A1_MOUSE_17,
urn:biopax:ModificationFeature:CO5A1_MOUSE_18,
urn:biopax:ModificationFeature:CO5A1_MOUSE_19,
urn:biopax:ModificationFeature:CO5A1_MOUSE_2,
urn:biopax:ModificationFeature:CO5A1_MOUSE_20,
urn:biopax:ModificationFeature:CO5A1_MOUSE_21,
urn:biopax:ModificationFeature:CO5A1_MOUSE_22,
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urn:biopax:ModificationFeature:CO5A1_MOUSE_29,
urn:biopax:ModificationFeature:CO5A1_MOUSE_3,
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urn:biopax:ModificationFeature:CO5A1_MOUSE_31,
urn:biopax:ModificationFeature:CO5A1_MOUSE_32,
urn:biopax:ModificationFeature:CO5A1_MOUSE_33,
urn:biopax:ModificationFeature:CO5A1_MOUSE_34,
urn:biopax:ModificationFeature:CO5A1_MOUSE_35,
urn:biopax:ModificationFeature:CO5A1_MOUSE_36,
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urn:biopax:ModificationFeature:CO5A1_MOUSE_39,
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urn:biopax:ModificationFeature:CO5A1_MOUSE_41,
urn:biopax:ModificationFeature:CO5A1_MOUSE_42,
urn:biopax:ModificationFeature:CO5A1_MOUSE_43,
urn:biopax:ModificationFeature:CO5A1_MOUSE_44,
urn:biopax:ModificationFeature:CO5A1_MOUSE_45,
urn:biopax:ModificationFeature:CO5A1_MOUSE_46,
urn:biopax:ModificationFeature:CO5A1_MOUSE_47,
urn:biopax:ModificationFeature:CO5A1_MOUSE_48,
urn:biopax:ModificationFeature:CO5A1_MOUSE_49,
urn:biopax:ModificationFeature:CO5A1_MOUSE_5,
urn:biopax:ModificationFeature:CO5A1_MOUSE_50,
urn:biopax:ModificationFeature:CO5A1_MOUSE_51,
urn:biopax:ModificationFeature:CO5A1_MOUSE_52,
urn:biopax:ModificationFeature:CO5A1_MOUSE_53,
urn:biopax:ModificationFeature:CO5A1_MOUSE_54,
urn:biopax:ModificationFeature:CO5A1_MOUSE_55,
urn:biopax:ModificationFeature:CO5A1_MOUSE_56,
urn:biopax:ModificationFeature:CO5A1_MOUSE_57,
urn:biopax:ModificationFeature:CO5A1_MOUSE_58,
urn:biopax:ModificationFeature:CO5A1_MOUSE_59,
urn:biopax:ModificationFeature:CO5A1_MOUSE_6,
urn:biopax:ModificationFeature:CO5A1_MOUSE_60,
urn:biopax:ModificationFeature:CO5A1_MOUSE_61,
urn:biopax:ModificationFeature:CO5A1_MOUSE_62,
urn:biopax:ModificationFeature:CO5A1_MOUSE_63,
urn:biopax:ModificationFeature:CO5A1_MOUSE_64,
urn:biopax:ModificationFeature:CO5A1_MOUSE_65,
urn:biopax:ModificationFeature:CO5A1_MOUSE_7,
urn:biopax:ModificationFeature:CO5A1_MOUSE_8,
urn:biopax:ModificationFeature:CO5A1_MOUSE_9
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biopax3:organism | |
biopax3:sequence |
MDVHTRWKAARPGALLLSSPLLLFLLLLWAPPSSRAAQPADLLEMLDFHNLPSGVTKTTGFCATRRSSSEPDVAYRVSKDAQLSMPTKQLYPESGFPEDFSILTTVKAKKGSQAFLVSIYNEQGIQQLGLELGRSPVFLYEDHTGKPGPEEYPLFPGINLSDGKWHRIALSVYKKNVTLILDCKKKITKFLSRSDHPIIDTNGIVMFGSRILDDEIFEGDIQQLLFVSDNRAAYDYCEHYSPDCDTAVPDTPQSQDPNPDEYYPEGEGETYYYEYPYYEDPEDPGKEPAPTQKPVEAARETTEVPEEQTQPLPEAPTVPETSDTADKEDSLGIGDYDYVPPDDYYTPPPYEDFGYGEGVENPDQPTNPDSGAEVPTSTTVTSNTSNPAPGEGKDDLGGEFTEETIKNLEENYYDPYFDPDSDSSVSPSEIGPGMPANQDTIFEGIGGPRGEKGQKGEPAIIEPGMLIEGPPGPEGPAGLPGPPGTTGPTGQMGDPGERGPPGRPGLPGADGLPGPPGTMLMLPFRFGGGGDAGSKGPMVSAQESQAQAILQQARLALRGPAGPMGLTGRPGPMGPPGSGGLKGEPGDMGPQGPRGVQGPPGPTGKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPGIPGDDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGGQGPPGPQGPIGYPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGEDGPEGPKGRGGPNGDPGPLGPTGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPGAAGKEGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALGLKGSEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGLPGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQQGLFGQKGDEGSRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGDPGLPGEGGPLGPKGERGEKGEAGPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSSGPKGDQGITGPSGPLGPPGPPGLPGPPGPKGAKGSSGPTGPKGEAGHPGLPGPPGPPGEVIQPLPIQASRTRRNIDASQLLDDGAGESYVDYADGMEEIFGSLNSLKLEIEQMKRPLGTQQNPARTCKDLQLCHPDFPDGEYWVDPNQGCSRDSFKVYCNFTAGGSTCVFPDKKSEGARITSWPKENPGSWFSEFKRGKLLSYVDAEGNPVGVVQMTFLRLLSASAHQNVTYNCYQSVAWQDAATGSYDKAIRFLGSNDEEMSYDNNPYIRALVDGCATKKGYQKTVLEIDTPKVEQVPIVDIMFNDFGEASQKFGFEVGPACFLG
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biopax3:standardName |
Collagen alpha-1(V) chain
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