Statements in which the resource exists as a subject.
PredicateObject
rdf:type
lifeskim:mentions
pubmed:issue
12
pubmed:dateCreated
1999-2-16
pubmed:databankReference
http://linkedlifedata.com/resource/pubmed/xref/GENBANK/AB014360, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/AB014361, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/AB014362, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/AB014363, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/AB014364, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/AB014365, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/AB014366, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/AB014367, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/AB014368, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/AB014369, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/AB014370, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/AB014371, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/AB014372, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/AB014373, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/AB014374, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/AB014375, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/AB014376, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/AB014377, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/AB014378, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/AB014379, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/AB014380, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/AB014381, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/AB014382, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/AB014383, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/AB014384, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/AB014385, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/AB014386, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/AB014387, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/AB014388, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/AB014389
pubmed:abstractText
We determined full-length nucleotide sequence of hepatitis B virus (HBV) genome in sera from 40 Japanese patients with HBsAg-positive hepatocellular carcinoma (HCC), in order to obtain information on HCC-specific characteristics, if any, of the HBV genome. Direct sequencing of the long distance PCR products starting from 50 microliters of serum samples revealed that 95% of our isolates were of genotype C, and that mutations and deletions/insertions were very common. With respect to envelope protein genes, deletions and missense mutations were frequent in preS2, and the determinant a domain of HBsAg was rich in "antibody-escape" mutations. Within the precore/core region, the most remarkable mutation was the replacement of proline of wild type by other amino acids at codon 130 of the core gene, which was found in 58% of our isolates, while precore-stop mutation was found in 45%. Most interestingly, however, about 90% of our isolates had mutations at nt positions 1762 (A-to-T) and 1764 (G-to-A) within the core promoter, which had been implicated in "e-suppressive" phenotype of HBV genome. G-to-A at nt 1613 and C-to-T at nt 1653 within enhancer II and T-to-C/A at nt 1753 within core promoter were also evident: 38%, 53%, and 40%, respectively. It was interesting that some of the characteristics observed in our isolates form HCC patients had been previously implicated in fulminant hepatitis and/or acute exacerbation of chronic hepatitis.
pubmed:language
eng
pubmed:journal
pubmed:citationSubset
IM
pubmed:chemical
pubmed:status
MEDLINE
pubmed:issn
0304-8608
pubmed:author
pubmed:issnType
Print
pubmed:volume
143
pubmed:owner
NLM
pubmed:authorsComplete
Y
pubmed:pagination
2313-26
pubmed:dateRevised
2008-11-21
pubmed:meshHeading
pubmed-meshheading:9930189-Adult, pubmed-meshheading:9930189-Aged, pubmed-meshheading:9930189-Amino Acid Sequence, pubmed-meshheading:9930189-Base Sequence, pubmed-meshheading:9930189-Carcinoma, Hepatocellular, pubmed-meshheading:9930189-DNA, Viral, pubmed-meshheading:9930189-DNA Primers, pubmed-meshheading:9930189-Female, pubmed-meshheading:9930189-Genes, env, pubmed-meshheading:9930189-Genome, Viral, pubmed-meshheading:9930189-Hepatitis B, pubmed-meshheading:9930189-Hepatitis B Surface Antigens, pubmed-meshheading:9930189-Hepatitis B virus, pubmed-meshheading:9930189-Humans, pubmed-meshheading:9930189-Liver Neoplasms, pubmed-meshheading:9930189-Male, pubmed-meshheading:9930189-Middle Aged, pubmed-meshheading:9930189-Molecular Sequence Data, pubmed-meshheading:9930189-Mutation, pubmed-meshheading:9930189-Phylogeny, pubmed-meshheading:9930189-Polymerase Chain Reaction, pubmed-meshheading:9930189-Promoter Regions, Genetic, pubmed-meshheading:9930189-Viral Core Proteins
pubmed:year
1998
pubmed:articleTitle
Hepatitis B virus genomic sequence in the circulation of hepatocellular carcinoma patients: comparative analysis of 40 full-length isolates.
pubmed:affiliation
Department of Medical Sciences, Toshiba General Hospital, Tokyo, Japan.
pubmed:publicationType
Journal Article, Comparative Study, Research Support, Non-U.S. Gov't