Linked Life Data

6188489

Source:http://linkedlifedata.com/resource/pubmed/id/6188489

Statements in which the resource exists as a subject.
PredicateObject
rdf:type
lifeskim:mentions
pubmed:issue
6
pubmed:dateCreated
1983-6-17
pubmed:abstractText
Carbon-13 enrichment of the C1' position of the ribose moiety in Escherichia coli tRNA has made possible the detailed study of motion in this molecule. Enrichment was accomplished in vivo with a strain, M1R, selected for growth and degree of incorporation of ribose in a stringently defined minimal medium. Purine biosynthesis de novo was blocked with 6-mercaptopurine. Exogenously provided [1-13C]ribose and nucleobases were utilized via the salvage pathway and were required for growth of culture. Carbon-13-enriched transfer RNA in solution at 30 degrees C exhibited a prominent, broad, asymmetric NMR signal at 91.5 ppm for the C1' carbon. Upon heat denaturation of the tRNA, three C1' signals were resolved and could be attributed to the base-specific nucleotides in tRNA: uridine and guanosine at 88.7 ppm; adenosine at 89.5 ppm; and cytidine at 90.6 ppm. Ribose C3' and C5' were partially enriched due to scrambling of ribose carbons in vivo. The minimum net isotopic enrichment of C1' was 33%. Values for the relaxation time T1 and the nuclear Overhauser enhancement (NOE) at 75.5, 67.8, and 25.2 MHz (13C), the NOE at 50.3 MHz, T2 at 75.5 MHz, and line widths over the range of 20-75.5 MHz were analyzed in light of several models for internal motion in macromolecules. The data were inconsistent with physically unreasonable constructs involving free internal diffusion of the C1'-H vector about the glycosidic bond. Internal diffusion (wobble) within a cone or jumps between states were models that did fit the data. For diffusion within a cone, the cone half-angle was 15-20 degrees, with a correlation time of about 2 X 10(-9) s for internal reorientation. With the two-state jump model, the half-angle for jumps about the glycosidic bond was 14 +/- 2 degrees with a lifetime of 2 X 10(-9) s.
pubmed:grant
pubmed:language
eng
pubmed:journal
pubmed:citationSubset
IM
pubmed:chemical
pubmed:status
MEDLINE
pubmed:month
Mar
pubmed:issn
0006-2960
pubmed:author
pubmed:issnType
Print
pubmed:day
15
pubmed:volume
22
pubmed:owner
NLM
pubmed:authorsComplete
Y
pubmed:pagination
1408-15
pubmed:dateRevised
2008-11-21
pubmed:meshHeading
pubmed:year
1983
pubmed:articleTitle
Internal dynamics of transfer ribonucleic acid determined by nuclear magnetic resonance of carbon-13-enriched ribose carbon 1.
pubmed:publicationType
Journal Article, Research Support, U.S. Gov't, P.H.S.