Source:http://linkedlifedata.com/resource/pubmed/id/19846439
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rdf:type | |
lifeskim:mentions | |
pubmed:issue |
24
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pubmed:dateCreated |
2009-12-7
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pubmed:abstractText |
G-compass is designed for efficient comparative genome analysis between human and other vertebrate genomes. The current version of G-compass allows us to browse two corresponding genomic regions between human and another species in parallel. One-to-one evolutionarily conserved regions (i.e. orthologous regions) between species are highlighted along the genomes. Information such as locations of duplicated regions, copy number variations and mammalian ultra-conserved elements is also provided. These features of G-compass enable us to easily determine patterns of genomic rearrangements and changes in gene orders through evolutionary time. Since G-compass is a satellite database of H-InvDB, which is a comprehensive annotation resource for human genes and transcripts, users can easily refer to manually curated functional annotations and other abundant biological information for each human transcript. G-compass is expected to be a valuable tool for comparing human and model organisms and promoting the exchange of functional information.
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pubmed:commentsCorrections |
http://linkedlifedata.com/resource/pubmed/commentcorrection/19846439-11932250,
http://linkedlifedata.com/resource/pubmed/commentcorrection/19846439-12529312,
http://linkedlifedata.com/resource/pubmed/commentcorrection/19846439-16169162,
http://linkedlifedata.com/resource/pubmed/commentcorrection/19846439-16709588,
http://linkedlifedata.com/resource/pubmed/commentcorrection/19846439-17130149,
http://linkedlifedata.com/resource/pubmed/commentcorrection/19846439-17982176,
http://linkedlifedata.com/resource/pubmed/commentcorrection/19846439-18086701,
http://linkedlifedata.com/resource/pubmed/commentcorrection/19846439-18089548,
http://linkedlifedata.com/resource/pubmed/commentcorrection/19846439-19033362
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pubmed:language |
eng
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pubmed:journal | |
pubmed:citationSubset |
IM
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pubmed:status |
MEDLINE
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pubmed:month |
Dec
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pubmed:issn |
1367-4811
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pubmed:author | |
pubmed:issnType |
Electronic
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pubmed:day |
15
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pubmed:volume |
25
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pubmed:owner |
NLM
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pubmed:authorsComplete |
Y
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pubmed:pagination |
3321-2
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pubmed:dateRevised |
2010-9-28
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pubmed:meshHeading |
pubmed-meshheading:19846439-Animals,
pubmed-meshheading:19846439-DNA Copy Number Variations,
pubmed-meshheading:19846439-Databases, Genetic,
pubmed-meshheading:19846439-Genome,
pubmed-meshheading:19846439-Genomics,
pubmed-meshheading:19846439-Humans,
pubmed-meshheading:19846439-Internet,
pubmed-meshheading:19846439-Software,
pubmed-meshheading:19846439-Vertebrates
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pubmed:year |
2009
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pubmed:articleTitle |
G-compass: a web-based comparative genome browser between human and other vertebrate genomes.
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pubmed:affiliation |
Japan Biological Information Research Center, Japan Biological Informatics Consortium, Aomi 2-42, Koto-ku, Tokyo 135-0064, Japan.
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pubmed:publicationType |
Journal Article,
Comparative Study,
Research Support, Non-U.S. Gov't
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