Statements in which the resource exists as a subject.
PredicateObject
rdf:type
lifeskim:mentions
pubmed:issue
10
pubmed:dateCreated
2008-9-29
pubmed:databankReference
http://linkedlifedata.com/resource/pubmed/xref/GENBANK/AM933651, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/AM933652, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/AM933653, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/AM933654, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/AM933655, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/AM933656, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/AM933657, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/AM933658, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/AM933659, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/AM933660, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/AM933661, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/AM933662, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/AM933663, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/AM933664, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/AM933665
pubmed:abstractText
Enrichment cultures capable of reductively dechlorinating 1,2,4-trichlorodibenzo-p-dioxin (1,2,4-TrCDD) were shown to dechlorinate 1,2,3-trichlorobenzene (1,2,3-TrCB) to 1,3-dichlorobenzene. To test if this activity can be used to enrich for dioxin-dechlorinating bacteria, a two-liquid phase cultivation with 200 mM 1,2,3-TrCB dissolved in hexadecane was established. During the dechlorination of 1,2,3-TrCB, the number of 1,2,4-TrCDD-dechlorinating bacteria increased by four orders of magnitude, eventually accounting for 11% of the total cell number. Characterization of the bacterial communities of the initial dioxin-dechlorinating culture and of the trichlorobenzene enrichments by restriction fragment length polymorphism (RFLP) analysis of cloned 16S rRNA genes revealed a proportional increase of nine different sequence types, one representing a Dehalococcoides strain. Inhibition of methanogens further enhanced the rate of chlorobenzene dehalogenation and also resulted in a rapid dechlorination of 1,2,3,4-tetrachlorodibenzo-p-dioxin that was applied via a hexadecane phase. The further enrichment was monitored by terminal RFLP, quantitative real-time PCR and microscopy, and aimed at the reduction of the accompanying non-dehalogenating populations by using different combinations of electron donors and the application of antibiotics. Hydrogen as the sole electron donor proved to be less efficient due to the co-enrichment of acetogens. The novel Dehalococcoides strain DCMB5 was enriched up to 50% by the cultivation with organic acids, hydrogen and vancomycin, and was finally purified by conventional isolation techniques.
pubmed:language
eng
pubmed:journal
pubmed:citationSubset
IM
pubmed:chemical
http://linkedlifedata.com/resource/pubmed/chemical/1,2,4-trichlorodibenzo-1,4-dioxin, http://linkedlifedata.com/resource/pubmed/chemical/1,3-dichlorobenzene, http://linkedlifedata.com/resource/pubmed/chemical/Anti-Bacterial Agents, http://linkedlifedata.com/resource/pubmed/chemical/Carboxylic Acids, http://linkedlifedata.com/resource/pubmed/chemical/Chlorobenzenes, http://linkedlifedata.com/resource/pubmed/chemical/Culture Media, http://linkedlifedata.com/resource/pubmed/chemical/DNA, Bacterial, http://linkedlifedata.com/resource/pubmed/chemical/DNA, Ribosomal, http://linkedlifedata.com/resource/pubmed/chemical/Hydrogen, http://linkedlifedata.com/resource/pubmed/chemical/RNA, Ribosomal, 16S, http://linkedlifedata.com/resource/pubmed/chemical/Tetrachlorodibenzodioxin, http://linkedlifedata.com/resource/pubmed/chemical/Vancomycin, http://linkedlifedata.com/resource/pubmed/chemical/trichlorobenzene
pubmed:status
MEDLINE
pubmed:month
Oct
pubmed:issn
1462-2920
pubmed:author
pubmed:issnType
Electronic
pubmed:volume
10
pubmed:owner
NLM
pubmed:authorsComplete
Y
pubmed:pagination
2670-83
pubmed:meshHeading
pubmed-meshheading:18627411-Anti-Bacterial Agents, pubmed-meshheading:18627411-Carboxylic Acids, pubmed-meshheading:18627411-Chlorobenzenes, pubmed-meshheading:18627411-Chloroflexi, pubmed-meshheading:18627411-Colony Count, Microbial, pubmed-meshheading:18627411-Culture Media, pubmed-meshheading:18627411-DNA, Bacterial, pubmed-meshheading:18627411-DNA, Ribosomal, pubmed-meshheading:18627411-DNA Fingerprinting, pubmed-meshheading:18627411-Hydrogen, pubmed-meshheading:18627411-Metabolic Networks and Pathways, pubmed-meshheading:18627411-Microscopy, pubmed-meshheading:18627411-Molecular Sequence Data, pubmed-meshheading:18627411-Molecular Structure, pubmed-meshheading:18627411-Phylogeny, pubmed-meshheading:18627411-Polymerase Chain Reaction, pubmed-meshheading:18627411-Polymorphism, Restriction Fragment Length, pubmed-meshheading:18627411-RNA, Ribosomal, 16S, pubmed-meshheading:18627411-Sequence Analysis, DNA, pubmed-meshheading:18627411-Tetrachlorodibenzodioxin, pubmed-meshheading:18627411-Vancomycin
pubmed:year
2008
pubmed:articleTitle
Enrichment of a dioxin-dehalogenating Dehalococcoides species in two-liquid phase cultures.
pubmed:affiliation
Institute of Biology/Microbiology, Martin-Luther-Universität Halle-Wittenberg, Germany; and Institute of Microbiology, Universität Innsbruck, Austria.
pubmed:publicationType
Journal Article, Research Support, Non-U.S. Gov't