Knowing which proteins exist in a certain organism or cell type and how these proteins interact with each other are necessary for the understanding of biological processes at the whole cell level. The determination of the protein-protein interaction (PPI) networks has been the subject of extensive research. Despite the development of reasonably successful methods, serious technical difficulties still exist. In this paper we present DomainGA, a quantitative computational approach that uses the information about the domain-domain interactions to predict the interactions between proteins.
Computational Biology and Bioinformatics Group, Pacific Northwest National Laboratory, Richland, WA 99352, USA. mudita.singhal@pnl.gov <mudita.singhal@pnl.gov>
