Statements in which the resource exists as a subject.
PredicateObject
rdf:type
lifeskim:mentions
pubmed:issue
10
pubmed:dateCreated
2007-4-20
pubmed:abstractText
Photoreverse reactions of octopus rhodopsin (Rh) from acid-metarhodopsin (Acid-Meta), which is the final product of the photoreaction of Rh, to Rh were studied by the time-resolved transient absorption and transient grating methods. The time course of the absorption signal showed a rapid change within 500 ns followed by one phase with a time constant of approximately 470 micros, whereas the transient grating signal indicates three phases with time constants of <500 ns, approximately 490 micros, and 2.6 ms. The faster two phases indicate the conformational change in the vicinity of the chromophore, and the slowest one represents conformational change far from the chromophore. The absorption spectrum of the first intermediate created just after the laser excitation (<500 ns) is already very similar to the final product, Rh. This behavior is quite different from that of the forward reaction from Rh to Acid-Meta, in which several intermediates with different absorption spectra are involved within 50 ns-500 micros. This result indicates that the conformation around the chromophore is easily adjusted from all-trans to 11-cis forms compared with that from 11-cis to all-trans forms. Furthermore, it was found that the protein energy is quickly relaxed after the excitation. One of the significantly different properties between Rh and Acid-Meta is the diffusion coefficient (D). D is reduced by about half the transformation from Rh to Acid-Meta. This large reduction was interpreted in terms of the helix opening of the Rh structure.
pubmed:commentsCorrections
http://linkedlifedata.com/resource/pubmed/commentcorrection/17325000-11041833, http://linkedlifedata.com/resource/pubmed/commentcorrection/17325000-11371464, http://linkedlifedata.com/resource/pubmed/commentcorrection/17325000-11384968, http://linkedlifedata.com/resource/pubmed/commentcorrection/17325000-11863442, http://linkedlifedata.com/resource/pubmed/commentcorrection/17325000-12124293, http://linkedlifedata.com/resource/pubmed/commentcorrection/17325000-13678959, http://linkedlifedata.com/resource/pubmed/commentcorrection/17325000-1492131, http://linkedlifedata.com/resource/pubmed/commentcorrection/17325000-15056918, http://linkedlifedata.com/resource/pubmed/commentcorrection/17325000-15322129, http://linkedlifedata.com/resource/pubmed/commentcorrection/17325000-15454453, http://linkedlifedata.com/resource/pubmed/commentcorrection/17325000-15454461, http://linkedlifedata.com/resource/pubmed/commentcorrection/17325000-16173753, http://linkedlifedata.com/resource/pubmed/commentcorrection/17325000-16500975, http://linkedlifedata.com/resource/pubmed/commentcorrection/17325000-16648173, http://linkedlifedata.com/resource/pubmed/commentcorrection/17325000-16679373, http://linkedlifedata.com/resource/pubmed/commentcorrection/17325000-16853945, http://linkedlifedata.com/resource/pubmed/commentcorrection/17325000-16935954, http://linkedlifedata.com/resource/pubmed/commentcorrection/17325000-1925597, http://linkedlifedata.com/resource/pubmed/commentcorrection/17325000-2021639, http://linkedlifedata.com/resource/pubmed/commentcorrection/17325000-2334708, http://linkedlifedata.com/resource/pubmed/commentcorrection/17325000-3366250, http://linkedlifedata.com/resource/pubmed/commentcorrection/17325000-3615630, http://linkedlifedata.com/resource/pubmed/commentcorrection/17325000-39625, http://linkedlifedata.com/resource/pubmed/commentcorrection/17325000-5634499, http://linkedlifedata.com/resource/pubmed/commentcorrection/17325000-7227523, http://linkedlifedata.com/resource/pubmed/commentcorrection/17325000-7407234, http://linkedlifedata.com/resource/pubmed/commentcorrection/17325000-8395515, http://linkedlifedata.com/resource/pubmed/commentcorrection/17325000-8643442, http://linkedlifedata.com/resource/pubmed/commentcorrection/17325000-9129835, http://linkedlifedata.com/resource/pubmed/commentcorrection/17325000-9789004
pubmed:language
eng
pubmed:journal
pubmed:citationSubset
IM
pubmed:chemical
pubmed:status
MEDLINE
pubmed:month
May
pubmed:issn
0006-3495
pubmed:author
pubmed:issnType
Print
pubmed:day
15
pubmed:volume
92
pubmed:owner
NLM
pubmed:authorsComplete
Y
pubmed:pagination
3643-51
pubmed:dateRevised
2009-11-18
pubmed:meshHeading
pubmed:year
2007
pubmed:articleTitle
Photoreverse reaction dynamics of octopus rhodopsin.
pubmed:affiliation
Graduate School of Science, Kyoto University, Kyoto, Japan.
pubmed:publicationType
Journal Article, Research Support, Non-U.S. Gov't