Statements in which the resource exists as a subject.
PredicateObject
rdf:type
lifeskim:mentions
pubmed:issue
1
pubmed:dateCreated
2005-12-1
pubmed:abstractText
An EST database has been generated for coffee based on sequences from approximately 47,000 cDNA clones derived from five different stages/tissues, with a special focus on developing seeds. When computationally assembled, these sequences correspond to 13,175 unigenes, which were analyzed with respect to functional annotation, expression profile and evolution. Compared with Arabidopsis, the coffee unigenes encode a higher proportion of proteins related to protein modification/turnover and metabolism-an observation that may explain the high diversity of metabolites found in coffee and related species. Several gene families were found to be either expanded or unique to coffee when compared with Arabidopsis. A high proportion of these families encode proteins assigned to functions related to disease resistance. Such families may have expanded and evolved rapidly under the intense pathogen pressure experienced by a tropical, perennial species like coffee. Finally, the coffee gene repertoire was compared with that of Arabidopsis and Solanaceous species (e.g. tomato). Unlike Arabidopsis, tomato has a nearly perfect gene-for-gene match with coffee. These results are consistent with the facts that coffee and tomato have a similar genome size, chromosome karyotype (tomato, n=12; coffee n=11) and chromosome architecture. Moreover, both belong to the Asterid I clade of dicot plant families. Thus, the biology of coffee (family Rubiacaeae) and tomato (family Solanaceae) may be united into one common network of shared discoveries, resources and information.
pubmed:commentsCorrections
http://linkedlifedata.com/resource/pubmed/commentcorrection/16273343-10508846, http://linkedlifedata.com/resource/pubmed/commentcorrection/16273343-11108716, http://linkedlifedata.com/resource/pubmed/commentcorrection/16273343-11115876, http://linkedlifedata.com/resource/pubmed/commentcorrection/16273343-11125043, http://linkedlifedata.com/resource/pubmed/commentcorrection/16273343-11130711, http://linkedlifedata.com/resource/pubmed/commentcorrection/16273343-11590104, http://linkedlifedata.com/resource/pubmed/commentcorrection/16273343-11917018, http://linkedlifedata.com/resource/pubmed/commentcorrection/16273343-12084832, http://linkedlifedata.com/resource/pubmed/commentcorrection/16273343-12119366, http://linkedlifedata.com/resource/pubmed/commentcorrection/16273343-12527364, http://linkedlifedata.com/resource/pubmed/commentcorrection/16273343-12586867, http://linkedlifedata.com/resource/pubmed/commentcorrection/16273343-12602888, http://linkedlifedata.com/resource/pubmed/commentcorrection/16273343-12714727, http://linkedlifedata.com/resource/pubmed/commentcorrection/16273343-12746542, http://linkedlifedata.com/resource/pubmed/commentcorrection/16273343-12953112, http://linkedlifedata.com/resource/pubmed/commentcorrection/16273343-14682612, http://linkedlifedata.com/resource/pubmed/commentcorrection/16273343-14760538, http://linkedlifedata.com/resource/pubmed/commentcorrection/16273343-15001360, http://linkedlifedata.com/resource/pubmed/commentcorrection/16273343-8555446, http://linkedlifedata.com/resource/pubmed/commentcorrection/16273343-9037140, http://linkedlifedata.com/resource/pubmed/commentcorrection/16273343-9254694, http://linkedlifedata.com/resource/pubmed/commentcorrection/16273343-9331369, http://linkedlifedata.com/resource/pubmed/commentcorrection/16273343-9521921, http://linkedlifedata.com/resource/pubmed/commentcorrection/16273343-9811791, http://linkedlifedata.com/resource/pubmed/commentcorrection/16273343-9847076
pubmed:language
eng
pubmed:journal
pubmed:citationSubset
IM
pubmed:status
MEDLINE
pubmed:month
Dec
pubmed:issn
0040-5752
pubmed:author
pubmed:issnType
Print
pubmed:volume
112
pubmed:owner
NLM
pubmed:authorsComplete
Y
pubmed:pagination
114-30
pubmed:dateRevised
2010-9-21
pubmed:meshHeading
pubmed:year
2005
pubmed:articleTitle
Coffee and tomato share common gene repertoires as revealed by deep sequencing of seed and cherry transcripts.
pubmed:affiliation
Department of Plant Breeding and Genetics, Department of Plant Biology, Cornell University, Ithaca, NY 14853, USA.
pubmed:publicationType
Journal Article, Research Support, U.S. Gov't, Non-P.H.S., Research Support, Non-U.S. Gov't