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rdf:type |
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lifeskim:mentions |
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pubmed:issue |
Web Server issue
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pubmed:dateCreated |
2005-6-27
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pubmed:abstractText |
We present a set of programs and a website designed to facilitate protein structure comparison and protein structure modeling efforts. Our protein structure analysis and comparison services use the LGA (local-global alignment) program to search for regions of local similarity and to evaluate the level of structural similarity between compared protein structures. To facilitate the homology-based protein structure modeling process, our AL2TS service translates given sequence-structure alignment data into the standard Protein Data Bank (PDB) atom records (coordinates). For a given sequence of amino acids, the AS2TS (amino acid sequence to tertiary structure) system calculates (e.g. using PSI-BLAST PDB analysis) a list of the closest proteins from the PDB, and then a set of draft 3D models is automatically created. Web services are available at http://as2ts.llnl.gov/.
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pubmed:commentsCorrections |
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pubmed:language |
eng
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pubmed:journal |
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pubmed:citationSubset |
IM
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pubmed:chemical |
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pubmed:status |
MEDLINE
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pubmed:month |
Jul
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pubmed:issn |
1362-4962
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pubmed:author |
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pubmed:issnType |
Electronic
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pubmed:day |
1
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pubmed:volume |
33
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pubmed:owner |
NLM
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pubmed:authorsComplete |
Y
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pubmed:pagination |
W111-5
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pubmed:dateRevised |
2009-11-18
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pubmed:meshHeading |
pubmed-meshheading:15980437-Capsid Proteins,
pubmed-meshheading:15980437-Databases, Protein,
pubmed-meshheading:15980437-Internet,
pubmed-meshheading:15980437-Models, Molecular,
pubmed-meshheading:15980437-Protein Conformation,
pubmed-meshheading:15980437-Sequence Analysis, Protein,
pubmed-meshheading:15980437-Software,
pubmed-meshheading:15980437-Structural Homology, Protein
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pubmed:year |
2005
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pubmed:articleTitle |
AS2TS system for protein structure modeling and analysis.
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pubmed:affiliation |
Lawrence Livermore National Laboratory, 7000 East Avenue, Livermore, CA 94550, USA.
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pubmed:publicationType |
Journal Article,
Research Support, U.S. Gov't, Non-P.H.S.
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