Source:http://linkedlifedata.com/resource/pubmed/id/15617167
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| Predicate | Object |
|---|---|
| rdf:type | |
| lifeskim:mentions | |
| pubmed:issue |
4
|
| pubmed:dateCreated |
2004-12-23
|
| pubmed:abstractText |
We review recent results on local alignment. We begin with a review of classical methods and early heuristic methods, and then focus on more recent work on the seeding of local alignment. We show that these techniques give a vast improvement in both sensitivity and specificity over previous methods, and can achieve sensitivity at the level of classical algorithms while requiring orders of magnitude less runtime.
|
| pubmed:language |
eng
|
| pubmed:journal | |
| pubmed:citationSubset |
IM
|
| pubmed:status |
MEDLINE
|
| pubmed:month |
Dec
|
| pubmed:issn |
0219-7200
|
| pubmed:author | |
| pubmed:issnType |
Print
|
| pubmed:volume |
2
|
| pubmed:owner |
NLM
|
| pubmed:authorsComplete |
Y
|
| pubmed:pagination |
819-42
|
| pubmed:dateRevised |
2006-11-15
|
| pubmed:meshHeading |
pubmed-meshheading:15617167-Algorithms,
pubmed-meshheading:15617167-Computer Simulation,
pubmed-meshheading:15617167-Databases, Genetic,
pubmed-meshheading:15617167-Models, Genetic,
pubmed-meshheading:15617167-Models, Statistical,
pubmed-meshheading:15617167-Pattern Recognition, Automated,
pubmed-meshheading:15617167-Reproducibility of Results,
pubmed-meshheading:15617167-Sensitivity and Specificity,
pubmed-meshheading:15617167-Sequence Alignment,
pubmed-meshheading:15617167-Sequence Analysis,
pubmed-meshheading:15617167-Sequence Homology
|
| pubmed:year |
2004
|
| pubmed:articleTitle |
A tutorial of recent developments in the seeding of local alignment.
|
| pubmed:affiliation |
Department of Computer Science, University of Waterloo, Waterloo, ON, Canada, N2L 3G1, Canada. browndg@math.waterloo.ca
|
| pubmed:publicationType |
Journal Article,
Comparative Study,
Review,
Research Support, Non-U.S. Gov't,
Evaluation Studies
|