Source:http://linkedlifedata.com/resource/pubmed/id/15201182
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rdf:type | |
lifeskim:mentions | |
pubmed:issue |
18
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pubmed:dateCreated |
2004-12-13
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pubmed:abstractText |
SUMMARY: We describe a tool, called aCGH-Smooth, for the automated identification of breakpoints and smoothing of microarray comparative genomic hybridization (array CGH) data. aCGH-Smooth is written in visual C++, has a user-friendly interface including a visualization of the results and user-defined parameters adapting the performance of data smoothing and breakpoint recognition. aCGH-Smooth can handle array-CGH data generated by all array-CGH platforms: BAC, PAC, cosmid, cDNA and oligo CGH arrays. The tool has been successfully applied to real-life data. AVAILABILITY: aCGH-Smooth is free for researchers at academic and non-profit institutions at http://www.few.vu.nl/~vumarray/.
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pubmed:language |
eng
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pubmed:journal | |
pubmed:citationSubset |
IM
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pubmed:status |
MEDLINE
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pubmed:month |
Dec
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pubmed:issn |
1367-4803
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pubmed:author | |
pubmed:issnType |
Print
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pubmed:day |
12
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pubmed:volume |
20
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pubmed:owner |
NLM
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pubmed:authorsComplete |
Y
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pubmed:pagination |
3636-7
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pubmed:meshHeading |
pubmed-meshheading:15201182-Algorithms,
pubmed-meshheading:15201182-Chromosome Mapping,
pubmed-meshheading:15201182-DNA Mutational Analysis,
pubmed-meshheading:15201182-Gene Dosage,
pubmed-meshheading:15201182-Gene Expression Profiling,
pubmed-meshheading:15201182-In Situ Hybridization,
pubmed-meshheading:15201182-Oligonucleotide Array Sequence Analysis,
pubmed-meshheading:15201182-Sequence Analysis, DNA,
pubmed-meshheading:15201182-Software
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pubmed:year |
2004
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pubmed:articleTitle |
Breakpoint identification and smoothing of array comparative genomic hybridization data.
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pubmed:affiliation |
Faculty of Sciences, Vrije Universiteit, De Boelelaan 1117, Amsterdam 1081HV, The Netherlands. cjong@few.vu.nl <cjong@few.vu.nl>
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pubmed:publicationType |
Journal Article,
Evaluation Studies
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