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| Predicate | Object |
|---|---|
| rdf:type | |
| lifeskim:mentions | |
| pubmed:dateCreated |
1998-12-18
|
| pubmed:abstractText |
GeneExpress system has been designed to integrate description, analysis, and recognition of eukaryotic regulatory sequences. The system includes 5 basic units: (1) GeneNet contains an object-oriented database for accumulation of data on gene networks and signal transduction pathways and a Java-based viewer that allows an exploration and visualization of the GeneNet information; (2) Transcription Regulation combines the database on transcription regulatory regions of eukaryotic genes (TRRD) and TRRD Viewer; (3) Transcription Factor Binding Site Recognition contains a compilation of transcription factor binding sites (TFBSC) and programs for their analysis and recognition; (4) mRNA Translation is designed for analysis of structural and contextual features of mRNA 5'UTRs and prediction of their translation efficiency; and (5) ACTIVITY is the module for analysis and site activity prediction of a given nucleotide sequence. Integration of the databases in the GeneExpress is based on the Sequence Retrieval System (SRS) created in the European Bioinformatics Institute.
|
| pubmed:language |
eng
|
| pubmed:journal | |
| pubmed:citationSubset |
IM
|
| pubmed:chemical | |
| pubmed:status |
MEDLINE
|
| pubmed:issn |
1553-0833
|
| pubmed:author |
pubmed-author:AnankoE AEA,
pubmed-author:BabenkoV NVN,
pubmed-author:FrolovA SAS,
pubmed-author:GoryachkovskyT NTN,
pubmed-author:HeinemeyerTT,
pubmed-author:IgnatievaE VEV,
pubmed-author:KAOC JCJ,
pubmed-author:KochetovA VAV,
pubmed-author:KolchanovN ANA,
pubmed-author:KolesovG BGB,
pubmed-author:KolpakovF AFA,
pubmed-author:Kondrakhin YuV,
pubmed-author:LavryushevS VSV,
pubmed-author:MerkulovaT ITI,
pubmed-author:MilanesiLL,
pubmed-author:PodkolodnayaO AOA,
pubmed-author:PodkolodnyN LNL,
pubmed-author:Ponomarenko YuV,
pubmed-author:PonomarenkoM PMP,
pubmed-author:RomashchenkoA GAG,
pubmed-author:SolovyevV VVV,
pubmed-author:StepanenkoI LIL,
pubmed-author:VISV AVA,
pubmed-author:VorobievD GDG,
pubmed-author:WingenderEE
|
| pubmed:issnType |
Print
|
| pubmed:volume |
6
|
| pubmed:owner |
NLM
|
| pubmed:authorsComplete |
Y
|
| pubmed:pagination |
95-104
|
| pubmed:dateRevised |
2006-11-15
|
| pubmed:meshHeading |
pubmed-meshheading:9783214-Artificial Intelligence,
pubmed-meshheading:9783214-Binding Sites,
pubmed-meshheading:9783214-Computer Systems,
pubmed-meshheading:9783214-Databases, Factual,
pubmed-meshheading:9783214-Eukaryotic Cells,
pubmed-meshheading:9783214-Gene Expression Regulation,
pubmed-meshheading:9783214-Genes, Regulator,
pubmed-meshheading:9783214-Genome,
pubmed-meshheading:9783214-Protein Biosynthesis,
pubmed-meshheading:9783214-RNA, Messenger,
pubmed-meshheading:9783214-Software,
pubmed-meshheading:9783214-Transcription, Genetic,
pubmed-meshheading:9783214-Transcription Factors
|
| pubmed:year |
1998
|
| pubmed:articleTitle |
GeneExpress: a computer system for description, analysis, and recognition of regulatory sequences in eukaryotic genome.
|
| pubmed:affiliation |
Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia. kol@bionet.nsc.ru
|
| pubmed:publicationType |
Journal Article,
Research Support, Non-U.S. Gov't
|