| pubmed-article:9449358 | rdf:type | pubmed:Citation | lld:pubmed |
| pubmed-article:9449358 | lifeskim:mentions | umls-concept:C0206558 | lld:lifeskim |
| pubmed-article:9449358 | lifeskim:mentions | umls-concept:C0678594 | lld:lifeskim |
| pubmed-article:9449358 | lifeskim:mentions | umls-concept:C0597543 | lld:lifeskim |
| pubmed-article:9449358 | lifeskim:mentions | umls-concept:C2348042 | lld:lifeskim |
| pubmed-article:9449358 | pubmed:issue | 1 | lld:pubmed |
| pubmed-article:9449358 | pubmed:dateCreated | 1998-4-2 | lld:pubmed |
| pubmed-article:9449358 | pubmed:abstractText | Electron cryomicroscopy and icosahedral reconstruction are used to obtain the three-dimensional structure of the 1250-A-diameter herpesvirus B-capsid. The centers and orientations of particles in focal pairs of 400-kV, spot-scan micrographs are determined and iteratively refined by common-lines-based local and global refinement procedures. We describe the rationale behind choosing shared-memory multiprocessor computers for executing the global refinement, which is the most computationally intensive step in the reconstruction procedure. This refinement has been implemented on three different shared-memory supercomputers. The speedup and efficiency are evaluated by using test data sets with different numbers of particles and processors. Using this parallel refinement program, we refine the herpesvirus B-capsid from 355-particle images to 13-A resolution. The map shows new structural features and interactions of the protein subunits in the three distinct morphological units: penton, hexon, and triplex of this T = 16 icosahedral particle. | lld:pubmed |
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| pubmed-article:9449358 | pubmed:language | eng | lld:pubmed |
| pubmed-article:9449358 | pubmed:journal | http://linkedlifedata.com/r... | lld:pubmed |
| pubmed-article:9449358 | pubmed:citationSubset | IM | lld:pubmed |
| pubmed-article:9449358 | pubmed:status | MEDLINE | lld:pubmed |
| pubmed-article:9449358 | pubmed:month | Jan | lld:pubmed |
| pubmed-article:9449358 | pubmed:issn | 0006-3495 | lld:pubmed |
| pubmed-article:9449358 | pubmed:author | pubmed-author:ChinLL | lld:pubmed |
| pubmed-article:9449358 | pubmed:author | pubmed-author:RixonF JFJ | lld:pubmed |
| pubmed-article:9449358 | pubmed:author | pubmed-author:ScottL RLR | lld:pubmed |
| pubmed-article:9449358 | pubmed:author | pubmed-author:ZhouZ HZH | lld:pubmed |
| pubmed-article:9449358 | pubmed:author | pubmed-author:JakanaJJ | lld:pubmed |
| pubmed-article:9449358 | pubmed:author | pubmed-author:HaskellKK | lld:pubmed |
| pubmed-article:9449358 | pubmed:author | pubmed-author:SpearsHHJr | lld:pubmed |
| pubmed-article:9449358 | pubmed:issnType | Print | lld:pubmed |
| pubmed-article:9449358 | pubmed:volume | 74 | lld:pubmed |
| pubmed-article:9449358 | pubmed:owner | NLM | lld:pubmed |
| pubmed-article:9449358 | pubmed:authorsComplete | Y | lld:pubmed |
| pubmed-article:9449358 | pubmed:pagination | 576-88 | lld:pubmed |
| pubmed-article:9449358 | pubmed:dateRevised | 2009-11-18 | lld:pubmed |
| pubmed-article:9449358 | pubmed:meshHeading | pubmed-meshheading:9449358-... | lld:pubmed |
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| pubmed-article:9449358 | pubmed:meshHeading | pubmed-meshheading:9449358-... | lld:pubmed |
| pubmed-article:9449358 | pubmed:year | 1998 | lld:pubmed |
| pubmed-article:9449358 | pubmed:articleTitle | Refinement of herpesvirus B-capsid structure on parallel supercomputers. | lld:pubmed |
| pubmed-article:9449358 | pubmed:affiliation | Texas Center for Advanced Molecular Computation, University of Houston, 77204-3476, USA. | lld:pubmed |
| pubmed-article:9449358 | pubmed:publicationType | Journal Article | lld:pubmed |
| pubmed-article:9449358 | pubmed:publicationType | Research Support, U.S. Gov't, P.H.S. | lld:pubmed |
| pubmed-article:9449358 | pubmed:publicationType | Research Support, U.S. Gov't, Non-P.H.S. | lld:pubmed |
| pubmed-article:9449358 | pubmed:publicationType | Research Support, Non-U.S. Gov't | lld:pubmed |
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