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Predicate | Object |
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rdf:type | |
lifeskim:mentions | |
pubmed:issue |
4
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pubmed:dateCreated |
1997-4-11
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pubmed:abstractText |
Using cryo-electron microscopy we reconstructed the three-dimensional trajectories adopted in cryovitrified solutions by double-stranded DNA molecules in which the backbone of one strand lacked a phosphate at regular intervals of 20 nucleotides. The shape of such nicked DNA molecules was compared with that of DNA molecules with exactly the same sequence but without any single-stranded scissions. Upon changing the salt concentration we observed opposite effects of charge neutralization on nicked and non-nicked DNA. In low salt solutions (10 mM Tris-HCl, 10 mM NaCl) the applied dense nicking caused ca 3.5-fold reduction of the DNA persistence length as compared with non-nicked DNA. Upon increasing the salt concentration (to 150 mM NaCl and 10 mM MgCl2) the persistence length of non-nicked DNA appreciably decreased while that of nicked DNA molecules increased by a factor of 2.
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pubmed:language |
eng
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pubmed:journal | |
pubmed:citationSubset |
IM
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pubmed:chemical | |
pubmed:status |
MEDLINE
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pubmed:month |
Mar
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pubmed:issn |
0022-2836
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pubmed:author | |
pubmed:issnType |
Print
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pubmed:day |
7
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pubmed:volume |
266
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pubmed:owner |
NLM
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pubmed:authorsComplete |
Y
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pubmed:pagination |
711-21
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pubmed:dateRevised |
2008-11-21
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pubmed:meshHeading |
pubmed-meshheading:9102464-DNA,
pubmed-meshheading:9102464-DNA Damage,
pubmed-meshheading:9102464-Freezing,
pubmed-meshheading:9102464-Image Processing, Computer-Assisted,
pubmed-meshheading:9102464-Magnesium Chloride,
pubmed-meshheading:9102464-Microscopy, Electron,
pubmed-meshheading:9102464-Models, Molecular,
pubmed-meshheading:9102464-Nucleic Acid Conformation,
pubmed-meshheading:9102464-Single-Strand Specific DNA and RNA Endonucleases,
pubmed-meshheading:9102464-Sodium Chloride
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pubmed:year |
1997
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pubmed:articleTitle |
Opposite effect of counterions on the persistence length of nicked and non-nicked DNA.
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pubmed:affiliation |
Laboratoire d'Analyse Ultrastructurale, Bâtiment de Biologie, Université de Lausanne, Switzerland.
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pubmed:publicationType |
Journal Article,
Research Support, Non-U.S. Gov't
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