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rdf:type |
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lifeskim:mentions |
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pubmed:issue |
3
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pubmed:dateCreated |
1994-1-3
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pubmed:abstractText |
An empirical model of a liquid crystalline (L alpha phase) phosphatidylcholine (PC) bilayer interface is presented along with a function which calculates the position-dependent energy of associated solutes. The model approximates the interface as a gradual two-step transition, the first step being from an aqueous phase to a phase of reduced polarity, but which maintains a high enough concentration of water and/or polar head group moieties to satisfy the hydrogen bond-forming potential of the solute. The second transition is from the hydrogen bonding/low polarity region to an effectively anhydrous hydrocarbon phase. The "interfacial energies" of solutes within this variable medium are calculated based upon atomic positions and atomic parameters describing general polarity and hydrogen bond donor/acceptor propensities. This function was tested for its ability to reproduce experimental water-solvent partitioning energies and water-bilayer partitioning data. In both cases, the experimental data was reproduced fairly well. Energy minimizations carried out on beta-hexyl glucopyranoside led to identification of a global minimum for the interface-associated glycolipid which exhibited glycosidic torsion angles in agreement with prior results (Hare, B.J., K.P. Howard, and J.H. Prestegard. 1993. Biophys. J. 64:392-398). Molecular dynamics simulations carried out upon this same molecule within the simulated interface led to results which were consistent with a number of experimentally based conclusions from previous work, but failed to quantitatively reproduce an available NMR quadrupolar/dipolar coupling data set (Sanders, C.R., and J.H. Prestegard. 1991. J. Am. Chem. Soc. 113:1987-1996). The proposed model and functions are readily incorporated into computational energy modeling algorithms and may prove useful in future studies of membrane-associated molecules.
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pubmed:grant |
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pubmed:commentsCorrections |
http://linkedlifedata.com/resource/pubmed/commentcorrection/8241401-1390677,
http://linkedlifedata.com/resource/pubmed/commentcorrection/8241401-1489910,
http://linkedlifedata.com/resource/pubmed/commentcorrection/8241401-1525470,
http://linkedlifedata.com/resource/pubmed/commentcorrection/8241401-1536843,
http://linkedlifedata.com/resource/pubmed/commentcorrection/8241401-1547331,
http://linkedlifedata.com/resource/pubmed/commentcorrection/8241401-1941553,
http://linkedlifedata.com/resource/pubmed/commentcorrection/8241401-1992480,
http://linkedlifedata.com/resource/pubmed/commentcorrection/8241401-1998672,
http://linkedlifedata.com/resource/pubmed/commentcorrection/8241401-1998675,
http://linkedlifedata.com/resource/pubmed/commentcorrection/8241401-2223819,
http://linkedlifedata.com/resource/pubmed/commentcorrection/8241401-2432879,
http://linkedlifedata.com/resource/pubmed/commentcorrection/8241401-2636900,
http://linkedlifedata.com/resource/pubmed/commentcorrection/8241401-2742845,
http://linkedlifedata.com/resource/pubmed/commentcorrection/8241401-2775727,
http://linkedlifedata.com/resource/pubmed/commentcorrection/8241401-3167046,
http://linkedlifedata.com/resource/pubmed/commentcorrection/8241401-3207847,
http://linkedlifedata.com/resource/pubmed/commentcorrection/8241401-3293599,
http://linkedlifedata.com/resource/pubmed/commentcorrection/8241401-3735402,
http://linkedlifedata.com/resource/pubmed/commentcorrection/8241401-4366085,
http://linkedlifedata.com/resource/pubmed/commentcorrection/8241401-4371833,
http://linkedlifedata.com/resource/pubmed/commentcorrection/8241401-4407659,
http://linkedlifedata.com/resource/pubmed/commentcorrection/8241401-6806819,
http://linkedlifedata.com/resource/pubmed/commentcorrection/8241401-697929,
http://linkedlifedata.com/resource/pubmed/commentcorrection/8241401-7272298,
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http://linkedlifedata.com/resource/pubmed/commentcorrection/8241401-8457665
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pubmed:language |
eng
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pubmed:journal |
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pubmed:citationSubset |
IM
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pubmed:chemical |
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pubmed:status |
MEDLINE
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pubmed:month |
Sep
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pubmed:issn |
0006-3495
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pubmed:author |
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pubmed:issnType |
Print
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pubmed:volume |
65
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pubmed:owner |
NLM
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pubmed:authorsComplete |
Y
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pubmed:pagination |
1207-18
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pubmed:dateRevised |
2010-9-13
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pubmed:meshHeading |
pubmed-meshheading:8241401-Biophysical Phenomena,
pubmed-meshheading:8241401-Biophysics,
pubmed-meshheading:8241401-Glucosides,
pubmed-meshheading:8241401-Lipid Bilayers,
pubmed-meshheading:8241401-Magnetic Resonance Spectroscopy,
pubmed-meshheading:8241401-Membranes, Artificial,
pubmed-meshheading:8241401-Models, Chemical,
pubmed-meshheading:8241401-Phosphatidylcholines,
pubmed-meshheading:8241401-Thermodynamics,
pubmed-meshheading:8241401-Water
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pubmed:year |
1993
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pubmed:articleTitle |
An approximate model and empirical energy function for solute interactions with a water-phosphatidylcholine interface.
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pubmed:affiliation |
Department of Physiology and Biophysics, Case Western Reserve University School of Medicine, Cleveland, Ohio 44106.
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pubmed:publicationType |
Journal Article,
Research Support, U.S. Gov't, P.H.S.
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