rdf:type |
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lifeskim:mentions |
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pubmed:issue |
40
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pubmed:dateCreated |
1995-11-14
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pubmed:abstractText |
The binding of DNA topoisomerase III (Topo III) to a single-stranded DNA substrate containing a strong cleavage site has been examined. The minimal substrate requirement for Topo III-catalyzed cleavage has been determined to consist of 7 bases; 6 bases 5' to the cleavage site and only 1 base 3' to the site. Nuclease P1 protection experiments indicate that the enzyme also binds to its substrate asymmetrically, protecting approximately 12 bases 5' to the cleavage site and only 2 bases 3' to the cleavage site. A catalytically inactive mutant of Topo III shows the same protection pattern as the active polypeptide, indicating that Topo III is a site-specific binding protein as well as a topoisomerase. Consistent with this view, an oligonucleotide containing a cleavage site is a more effective inhibitor and is bound more efficiently by Topo III than an oligonucleotide without a cleavage site.
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pubmed:grant |
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pubmed:language |
eng
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pubmed:journal |
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pubmed:citationSubset |
IM
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pubmed:chemical |
http://linkedlifedata.com/resource/pubmed/chemical/DNA, Bacterial,
http://linkedlifedata.com/resource/pubmed/chemical/DNA, Single-Stranded,
http://linkedlifedata.com/resource/pubmed/chemical/DNA, Superhelical,
http://linkedlifedata.com/resource/pubmed/chemical/DNA Topoisomerases, Type I,
http://linkedlifedata.com/resource/pubmed/chemical/DNA topoisomerase III,
http://linkedlifedata.com/resource/pubmed/chemical/DNA-Binding Proteins,
http://linkedlifedata.com/resource/pubmed/chemical/Oligodeoxyribonucleotides
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pubmed:status |
MEDLINE
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pubmed:month |
Oct
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pubmed:issn |
0021-9258
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pubmed:author |
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pubmed:issnType |
Print
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pubmed:day |
6
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pubmed:volume |
270
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pubmed:owner |
NLM
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pubmed:authorsComplete |
Y
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pubmed:pagination |
23700-5
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pubmed:dateRevised |
2007-11-14
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pubmed:meshHeading |
pubmed-meshheading:7559540-Base Sequence,
pubmed-meshheading:7559540-Binding Sites,
pubmed-meshheading:7559540-DNA, Bacterial,
pubmed-meshheading:7559540-DNA, Single-Stranded,
pubmed-meshheading:7559540-DNA, Superhelical,
pubmed-meshheading:7559540-DNA Topoisomerases, Type I,
pubmed-meshheading:7559540-DNA-Binding Proteins,
pubmed-meshheading:7559540-Escherichia coli,
pubmed-meshheading:7559540-Models, Biological,
pubmed-meshheading:7559540-Molecular Sequence Data,
pubmed-meshheading:7559540-Nucleic Acid Conformation,
pubmed-meshheading:7559540-Oligodeoxyribonucleotides,
pubmed-meshheading:7559540-Substrate Specificity
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pubmed:year |
1995
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pubmed:articleTitle |
Escherichia coli DNA topoisomerase III is a site-specific DNA binding protein that binds asymmetrically to its cleavage site.
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pubmed:affiliation |
Molecular and Cell Biology Program, University of Maryland at Baltimore 21201, USA.
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pubmed:publicationType |
Journal Article,
Research Support, U.S. Gov't, P.H.S.
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