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Predicate | Object |
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rdf:type | |
lifeskim:mentions | |
pubmed:issue |
3
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pubmed:dateCreated |
1994-8-11
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pubmed:abstractText |
The molecular structure of the DNA A-tract dodecamer d(CGCAAATTTGCG) complexed with the drug Hoechst 33258 has been determined by X-ray diffraction analysis. The Hoechst molecule binds in the DNA minor groove covering the sequence AATTT of the central A-tract, with the piperazine group close to one of the GC regions. The drug molecule makes two three-centered hydrogen bonds from the nitrogen atoms of the benzimidazole rings to the N3 and O2 atoms of the DNA bases. Although a high propeller twist is observed in the A-tract, only one unsymmetrical three-centered hydrogen bond is present in the DNA major groove. The structure is compared with other minor-groove-binding drug complexes and the influence of these drugs on DNA A-tracts is discussed.
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pubmed:language |
eng
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pubmed:journal | |
pubmed:citationSubset |
IM
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pubmed:chemical | |
pubmed:status |
MEDLINE
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pubmed:month |
Jun
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pubmed:issn |
0014-2956
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pubmed:author | |
pubmed:issnType |
Print
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pubmed:day |
15
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pubmed:volume |
222
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pubmed:owner |
NLM
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pubmed:authorsComplete |
Y
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pubmed:pagination |
721-6
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pubmed:dateRevised |
2008-11-21
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pubmed:meshHeading |
pubmed-meshheading:7517864-Base Sequence,
pubmed-meshheading:7517864-Binding Sites,
pubmed-meshheading:7517864-Bisbenzimidazole,
pubmed-meshheading:7517864-Crystallography, X-Ray,
pubmed-meshheading:7517864-DNA,
pubmed-meshheading:7517864-Hydrogen Bonding,
pubmed-meshheading:7517864-Image Processing, Computer-Assisted,
pubmed-meshheading:7517864-Models, Molecular,
pubmed-meshheading:7517864-Molecular Sequence Data,
pubmed-meshheading:7517864-Nucleic Acid Conformation,
pubmed-meshheading:7517864-Oligodeoxyribonucleotides
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pubmed:year |
1994
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pubmed:articleTitle |
Three-dimensional crystal structure of the A-tract DNA dodecamer d(CGCAAATTTGCG) complexed with the minor-groove-binding drug Hoechst 33258.
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pubmed:affiliation |
Departament de Biologia Molecular i Cel-lular, Centre d'Investigació i Desenvolupament-C.S.I.C., Barcelona, Spain.
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pubmed:publicationType |
Journal Article,
Research Support, Non-U.S. Gov't
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