| pubmed-article:2717613 | rdf:type | pubmed:Citation | lld:pubmed |
| pubmed-article:2717613 | lifeskim:mentions | umls-concept:C0012854 | lld:lifeskim |
| pubmed-article:2717613 | lifeskim:mentions | umls-concept:C0037494 | lld:lifeskim |
| pubmed-article:2717613 | lifeskim:mentions | umls-concept:C0459800 | lld:lifeskim |
| pubmed-article:2717613 | lifeskim:mentions | umls-concept:C0039808 | lld:lifeskim |
| pubmed-article:2717613 | lifeskim:mentions | umls-concept:C0205360 | lld:lifeskim |
| pubmed-article:2717613 | lifeskim:mentions | umls-concept:C0037633 | lld:lifeskim |
| pubmed-article:2717613 | lifeskim:mentions | umls-concept:C1382100 | lld:lifeskim |
| pubmed-article:2717613 | lifeskim:mentions | umls-concept:C0599219 | lld:lifeskim |
| pubmed-article:2717613 | pubmed:issue | 9 | lld:pubmed |
| pubmed-article:2717613 | pubmed:dateCreated | 1989-6-9 | lld:pubmed |
| pubmed-article:2717613 | pubmed:abstractText | We compute the full harmonic vibrational spectrum and eigenmodes of a DNA oligomer, d(C-G)3, in optimized B and Z conformations in various ionic environments (0.01-5.0 M NaCl). The statistical interactions of DNA with the diffuse ionic cloud surrounding it in solution are approximately represented within the potential of mean force framework. The lowest eigenfrequency of the B conformation is found to drastically decrease with increased NaCl concentration. This suggests that a soft mode mechanism may be a precursor for the B-to-Z conversion. The free energy balance governing the B-Z isomerization of d(C-G)3 is dominated by the solvent-averaged effective phosphate-phosphate interactions due to substantial cancelations between the much larger intramolecular energy contributions. | lld:pubmed |
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| pubmed-article:2717613 | pubmed:language | eng | lld:pubmed |
| pubmed-article:2717613 | pubmed:journal | http://linkedlifedata.com/r... | lld:pubmed |
| pubmed-article:2717613 | pubmed:citationSubset | IM | lld:pubmed |
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| pubmed-article:2717613 | pubmed:status | MEDLINE | lld:pubmed |
| pubmed-article:2717613 | pubmed:month | May | lld:pubmed |
| pubmed-article:2717613 | pubmed:issn | 0027-8424 | lld:pubmed |
| pubmed-article:2717613 | pubmed:author | pubmed-author:SoumpasisD... | lld:pubmed |
| pubmed-article:2717613 | pubmed:author | pubmed-author:GarcíaA EAE | lld:pubmed |
| pubmed-article:2717613 | pubmed:issnType | Print | lld:pubmed |
| pubmed-article:2717613 | pubmed:volume | 86 | lld:pubmed |
| pubmed-article:2717613 | pubmed:owner | NLM | lld:pubmed |
| pubmed-article:2717613 | pubmed:authorsComplete | Y | lld:pubmed |
| pubmed-article:2717613 | pubmed:pagination | 3160-4 | lld:pubmed |
| pubmed-article:2717613 | pubmed:dateRevised | 2010-9-10 | lld:pubmed |
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| pubmed-article:2717613 | pubmed:year | 1989 | lld:pubmed |
| pubmed-article:2717613 | pubmed:articleTitle | Harmonic vibrations and thermodynamic stability of a DNA oligomer in monovalent salt solution. | lld:pubmed |
| pubmed-article:2717613 | pubmed:affiliation | Theoretical Division, Los Alamos National Laboratory, NM 87545. | lld:pubmed |
| pubmed-article:2717613 | pubmed:publicationType | Journal Article | lld:pubmed |
| pubmed-article:2717613 | pubmed:publicationType | Research Support, U.S. Gov't, P.H.S. | lld:pubmed |
| pubmed-article:2717613 | pubmed:publicationType | Research Support, U.S. Gov't, Non-P.H.S. | lld:pubmed |
| pubmed-article:2717613 | pubmed:publicationType | Research Support, Non-U.S. Gov't | lld:pubmed |
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