Source:http://linkedlifedata.com/resource/pubmed/id/21806838
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rdf:type | |
lifeskim:mentions | |
pubmed:dateCreated |
2011-8-31
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pubmed:abstractText |
Differential coexpression analysis (DCEA) is increasingly used for investigating the global transcriptional mechanisms underlying phenotypic changes. Current DCEA methods mostly adopt a gene connectivity-based strategy to estimate differential coexpression, which is characterized by comparing the numbers of gene neighbors in different coexpression networks. Although it simplifies the calculation, this strategy mixes up the identities of different coexpression neighbors of a gene, and fails to differentiate significant differential coexpression changes from those trivial ones. Especially, the correlation-reversal is easily missed although it probably indicates remarkable biological significance.
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pubmed:language |
eng
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pubmed:journal | |
pubmed:citationSubset |
IM
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pubmed:status |
MEDLINE
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pubmed:issn |
1471-2105
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pubmed:author | |
pubmed:issnType |
Electronic
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pubmed:volume |
12
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pubmed:owner |
NLM
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pubmed:authorsComplete |
Y
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pubmed:pagination |
315
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pubmed:meshHeading |
pubmed-meshheading:21806838-Algorithms,
pubmed-meshheading:21806838-Diabetes Mellitus, Type 2,
pubmed-meshheading:21806838-Expressed Sequence Tags,
pubmed-meshheading:21806838-Gene Expression Profiling,
pubmed-meshheading:21806838-Gene Expression Regulation,
pubmed-meshheading:21806838-Humans,
pubmed-meshheading:21806838-Oligonucleotide Array Sequence Analysis
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pubmed:year |
2011
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pubmed:articleTitle |
Link-based quantitative methods to identify differentially coexpressed genes and gene pairs.
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pubmed:affiliation |
Bioinformatics Center, Key Laboratory of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 320 Yueyang Road, Shanghai 200031, P.R. China.
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pubmed:publicationType |
Journal Article,
Research Support, Non-U.S. Gov't
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