Linked Life Data

21216747

Source:http://linkedlifedata.com/resource/pubmed/id/21216747

Statements in which the resource exists as a subject.
PredicateObject
rdf:type
lifeskim:mentions
pubmed:issue
2
pubmed:dateCreated
2011-2-11
pubmed:abstractText
The Rice TOGO Browser is an online public resource designed to facilitate integration and visualization of mapping data of bacterial artificial chromosome (BAC)/P1-derived artificial chromosome (PAC) clones, genes, restriction fragment length polymorphism (RFLP)/simple sequence repeat (SSR) markers and phenotype data represented as quantitative trait loci (QTLs) onto the genome sequence, and to provide a platform for more efficient utilization of genome information from the point of view of applied genomics as well as functional genomics. Three search options, namely keyword search, region search and trait search, generate various types of data in a user-friendly interface with three distinct viewers, a chromosome viewer, an integrated map viewer and a sequence viewer, thereby providing the opportunity to view the position of genes and/or QTLs at the chromosomal level and to retrieve any sequence information in a user-defined genome region. Furthermore, the gene list, marker list and genome sequence in a specified region delineated by RFLP/SSR markers and any sequences designed as primers can be viewed and downloaded to support forward genetics approaches. An additional feature of this database is the graphical viewer for BLAST search to reveal information not only for regions with significant sequence similarity but also for regions adjacent to those with similarity but with no hits between sequences. An easy to use and intuitive user interface can help a wide range of users in retrieving integrated mapping information including agronomically important traits on the rice genome sequence. The database can be accessed at http://agri-trait.dna.affrc.go.jp/.
pubmed:commentsCorrections
http://linkedlifedata.com/resource/pubmed/commentcorrection/21216747-10592192, http://linkedlifedata.com/resource/pubmed/commentcorrection/21216747-12597276, http://linkedlifedata.com/resource/pubmed/commentcorrection/21216747-16100779, http://linkedlifedata.com/resource/pubmed/commentcorrection/21216747-16381971, http://linkedlifedata.com/resource/pubmed/commentcorrection/21216747-16403737, http://linkedlifedata.com/resource/pubmed/commentcorrection/21216747-17145706, http://linkedlifedata.com/resource/pubmed/commentcorrection/21216747-17210932, http://linkedlifedata.com/resource/pubmed/commentcorrection/21216747-17984077, http://linkedlifedata.com/resource/pubmed/commentcorrection/21216747-18089549, http://linkedlifedata.com/resource/pubmed/commentcorrection/21216747-18820292, http://linkedlifedata.com/resource/pubmed/commentcorrection/21216747-19854933, http://linkedlifedata.com/resource/pubmed/commentcorrection/21216747-20423466, http://linkedlifedata.com/resource/pubmed/commentcorrection/21216747-21045061, http://linkedlifedata.com/resource/pubmed/commentcorrection/21216747-2231712
pubmed:language
eng
pubmed:journal
pubmed:citationSubset
IM
pubmed:status
MEDLINE
pubmed:month
Feb
pubmed:issn
1471-9053
pubmed:author
pubmed:issnType
Electronic
pubmed:volume
52
pubmed:owner
NLM
pubmed:authorsComplete
Y
pubmed:pagination
230-7
pubmed:dateRevised
2011-7-25
pubmed:meshHeading
pubmed:year
2011
pubmed:articleTitle
Rice TOGO Browser: A platform to retrieve integrated information on rice functional and applied genomics.
pubmed:affiliation
Genome Resource Center, National Institute of Agrobiological Sciences, Kannondai 2-1-2, Tsukuba, Ibaraki, 305-8602 Japan. nagamura@nias.affrc.go.jp
pubmed:publicationType
Journal Article, Research Support, Non-U.S. Gov't