Statements in which the resource exists as a subject.
PredicateObject
rdf:type
lifeskim:mentions
pubmed:issue
Database issue
pubmed:dateCreated
2009-12-22
pubmed:abstractText
BeetleBase (http://www.beetlebase.org) has been updated to provide more comprehensive genomic information for the red flour beetle Tribolium castaneum. The database contains genomic sequence scaffolds mapped to 10 linkage groups (genome assembly release Tcas_3.0), genetic linkage maps, the official gene set, Reference Sequences from NCBI (RefSeq), predicted gene models, ESTs and whole-genome tiling array data representing several developmental stages. The database was reconstructed using the upgraded Generic Model Organism Database (GMOD) modules. The genomic data is stored in a PostgreSQL relatational database using the Chado schema and visualized as tracks in GBrowse. The updated genetic map is visualized using the comparative genetic map viewer CMAP. To enhance the database search capabilities, the BLAST and BLAT search tools have been integrated with the GMOD tools. BeetleBase serves as a long-term repository for Tribolium genomic data, and is compatible with other model organism databases.
pubmed:grant
pubmed:commentsCorrections
http://linkedlifedata.com/resource/pubmed/commentcorrection/19820115-11932250, http://linkedlifedata.com/resource/pubmed/commentcorrection/19820115-15713233, http://linkedlifedata.com/resource/pubmed/commentcorrection/19820115-15834150, http://linkedlifedata.com/resource/pubmed/commentcorrection/19820115-17065605, http://linkedlifedata.com/resource/pubmed/commentcorrection/19820115-17090595, http://linkedlifedata.com/resource/pubmed/commentcorrection/19820115-17130148, http://linkedlifedata.com/resource/pubmed/commentcorrection/19820115-17148475, http://linkedlifedata.com/resource/pubmed/commentcorrection/19820115-18342244, http://linkedlifedata.com/resource/pubmed/commentcorrection/19820115-18362917, http://linkedlifedata.com/resource/pubmed/commentcorrection/19820115-18392873, http://linkedlifedata.com/resource/pubmed/commentcorrection/19820115-18495041, http://linkedlifedata.com/resource/pubmed/commentcorrection/19820115-9254694
pubmed:language
eng
pubmed:journal
pubmed:citationSubset
IM
pubmed:status
MEDLINE
pubmed:month
Jan
pubmed:issn
1362-4962
pubmed:author
pubmed:issnType
Electronic
pubmed:volume
38
pubmed:owner
NLM
pubmed:authorsComplete
Y
pubmed:pagination
D437-42
pubmed:dateRevised
2011-11-3
pubmed:meshHeading
pubmed:year
2010
pubmed:articleTitle
BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum.
pubmed:affiliation
KSU Bioinformatics Center, Division of Biology, Kansas State University, Manhattan, KS 66506, USA.
pubmed:publicationType
Journal Article, Research Support, N.I.H., Extramural, Research Support, N.I.H., Intramural