Source:http://linkedlifedata.com/resource/pubmed/id/19502341
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| Predicate | Object |
|---|---|
| rdf:type | |
| lifeskim:mentions | |
| pubmed:issue |
Pt 6
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| pubmed:dateCreated |
2009-6-8
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| pubmed:databankReference | |
| pubmed:abstractText |
An endophytic actinomycete, strain YIM 65188(T), was isolated from surface-sterilized tissue of Sedum sp. collected from Yunnan province, south-west China, and characterized by using a polyphasic approach. Analysis of the 16S rRNA gene sequence showed that strain YIM 65188(T) is a member of the genus Streptomyces and exhibited 97.5 and 96.3 % gene sequence similarities to Streptomyces specialis GW41-1564(T) and Streptomyces hainanensis YIM 47672(T), respectively, whereas low sequence similarity values (<95.2 %) distinguished strain YIM 65188(T) from all other Streptomyces species with validly published names. Strain YIM 65188(T) had a unique menaquinone composition, with the predominant quinones being MK-11(H(6)) and MK-10(H(6)), with moderate amounts of MK-10(H(8)), MK-11(H(8)), MK-9(H(8)), MK-11(H(4)), MK-9(H(6)) and MK-10(H(4)). Similarly, the closest phylogenetic relative, S. specialis GW41-1564(T), also had an unusual quinone composition, with the predominant menaquinones MK-10(H(4)) and MK-10(H(6)) and minor amounts of MK-9(H(4)) and MK-9(H(6)). The DNA-DNA hybridization value between strain YIM 65188(T) and S. specialis GW41-1564(T) was 42.7 %. On the basis of phenotypic and phylogenetic characteristics, strain YIM 65188(T) was identified as a novel species of the genus Streptomyces for which the name Streptomyces sedi sp. nov. is proposed, with YIM 65188(T) (=CCTCC AA 208020(T) =DSM 41942(T)) as the type strain.
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| pubmed:language |
eng
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| pubmed:journal | |
| pubmed:citationSubset |
IM
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| pubmed:chemical |
http://linkedlifedata.com/resource/pubmed/chemical/DNA, Bacterial,
http://linkedlifedata.com/resource/pubmed/chemical/DNA, Ribosomal,
http://linkedlifedata.com/resource/pubmed/chemical/DNA Gyrase,
http://linkedlifedata.com/resource/pubmed/chemical/Quinones,
http://linkedlifedata.com/resource/pubmed/chemical/RNA, Ribosomal, 16S
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| pubmed:status |
MEDLINE
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| pubmed:month |
Jun
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| pubmed:issn |
1466-5026
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| pubmed:author | |
| pubmed:issnType |
Print
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| pubmed:volume |
59
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| pubmed:owner |
NLM
|
| pubmed:authorsComplete |
Y
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| pubmed:pagination |
1492-6
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| pubmed:meshHeading |
pubmed-meshheading:19502341-Bacterial Typing Techniques,
pubmed-meshheading:19502341-Base Composition,
pubmed-meshheading:19502341-China,
pubmed-meshheading:19502341-DNA, Bacterial,
pubmed-meshheading:19502341-DNA, Ribosomal,
pubmed-meshheading:19502341-DNA Gyrase,
pubmed-meshheading:19502341-Molecular Sequence Data,
pubmed-meshheading:19502341-Nucleic Acid Hybridization,
pubmed-meshheading:19502341-Phenotype,
pubmed-meshheading:19502341-Phylogeny,
pubmed-meshheading:19502341-Plant Roots,
pubmed-meshheading:19502341-Polymerase Chain Reaction,
pubmed-meshheading:19502341-Quinones,
pubmed-meshheading:19502341-RNA, Ribosomal, 16S,
pubmed-meshheading:19502341-Sedum,
pubmed-meshheading:19502341-Sequence Analysis, DNA,
pubmed-meshheading:19502341-Species Specificity,
pubmed-meshheading:19502341-Streptomyces
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| pubmed:year |
2009
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| pubmed:articleTitle |
Streptomyces sedi sp. nov., isolated from surface-sterilized roots of Sedum sp.
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| pubmed:affiliation |
The Key Laboratory for Microbial Resources of the Ministry of Education, PR China.
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| pubmed:publicationType |
Journal Article,
Research Support, Non-U.S. Gov't
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