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PredicateObject
rdf:type
lifeskim:mentions
pubmed:issue
6
pubmed:dateCreated
2009-3-2
pubmed:abstractText
Graves' disease (GD) is one of the most common human autoimmune diseases, and recent data estimated a prevalence of clinical hyperthyroidism of 0.25-1.09% in the population. Several reports have linked GD to the region 5q12-q33; and a locus between markers D5s436 and D5s434 was specifically linked to GD susceptibility in the Chinese population. In the present study, association analysis was performed using a large number of single-nucleotide polymorphisms (SNPs) at this locus in 2811 patients with GD recruited from different geographic regions of China. The strongest associations with GD in the combined Chinese Han cohorts were mapped to two SNPs in the promoter (pSNP) of SCGB3A2 [SNP76, rs1368408, P = 1.43 x 10(-6), odds ratio (OR) = 1.28 and SNP75, -623 - -622, P = 7.62 x 10(-5), OR = 1.32, respectively], a gene implicated in immune regulation. On the other hand, pSNP haplotypes composed of the SNP76 (rs1368408)+SNP74 (rs6882292) or SNP76+SNP75 (-623 approximately -622, AG/T) variants are correlated with high disease susceptibility (P = 0.0007, and P = 0.0192, respectively) in this combined Chinese Han cohort. Furthermore, these haplotypes were associated with reduced SCGB3A2 gene expression levels in human thyroid tissue, while functional analysis revealed a relatively low efficiency of SCGB3A2 promoters of the SNP76+SNP75 and SNP76+SNP74 haplotypes in driving gene expression. These results suggest that the SCGB3A2 gene may contribute to GD susceptibility.
pubmed:language
eng
pubmed:journal
pubmed:citationSubset
IM
pubmed:chemical
pubmed:status
MEDLINE
pubmed:month
Mar
pubmed:issn
1460-2083
pubmed:author
pubmed:issnType
Electronic
pubmed:day
15
pubmed:volume
18
pubmed:owner
NLM
pubmed:authorsComplete
Y
pubmed:pagination
1156-70
pubmed:dateRevised
2011-11-17
pubmed:meshHeading
pubmed-meshheading:19126779-Animals, pubmed-meshheading:19126779-Base Pairing, pubmed-meshheading:19126779-Base Sequence, pubmed-meshheading:19126779-Binding Sites, pubmed-meshheading:19126779-Conserved Sequence, pubmed-meshheading:19126779-Gene Expression Profiling, pubmed-meshheading:19126779-Gene Expression Regulation, pubmed-meshheading:19126779-Genetic Linkage, pubmed-meshheading:19126779-Genetic Markers, pubmed-meshheading:19126779-Genetic Predisposition to Disease, pubmed-meshheading:19126779-Graves Disease, pubmed-meshheading:19126779-Haplotypes, pubmed-meshheading:19126779-Humans, pubmed-meshheading:19126779-Mice, pubmed-meshheading:19126779-Molecular Sequence Data, pubmed-meshheading:19126779-Polymorphism, Single Nucleotide, pubmed-meshheading:19126779-Promoter Regions, Genetic, pubmed-meshheading:19126779-Proteins, pubmed-meshheading:19126779-Receptors, Immunologic, pubmed-meshheading:19126779-Regression Analysis, pubmed-meshheading:19126779-Reverse Transcriptase Polymerase Chain Reaction, pubmed-meshheading:19126779-Secretoglobins, pubmed-meshheading:19126779-Uteroglobin
pubmed:year
2009
pubmed:articleTitle
Functional SNPs in the SCGB3A2 promoter are associated with susceptibility to Graves' disease.
pubmed:affiliation
Ruijin Hospital, State Key Laboratory of Medical Genomics, Shanghai Institute of Endocrinology, Shanghai Jiao Tong University (SJTU), School of Medicine, Shanghai 20025, China. huaidong_s1966@163.com
pubmed:publicationType
Journal Article, Research Support, Non-U.S. Gov't