Statements in which the resource exists as a subject.
PredicateObject
rdf:type
lifeskim:mentions
pubmed:issue
9
pubmed:dateCreated
2008-12-2
pubmed:abstractText
Continuing our recent endeavor, we systematically investigate in this work the origin of internal rotational barriers for small molecules using the new energy partition scheme proposed recently by one of the authors [S. B. Liu, J. Chem. Phys. 126, 244103 (2007)], where the total electronic energy is decomposed into three independent components, steric, electrostatic, and fermionic quantum. Specifically, we focus in this work on six carbon, nitrogen, and oxygen containing hydrides, CH(3)CH(3), CH(3)NH(2), CH(3)OH, NH(2)NH(2), NH(2)OH, and H(2)O(2), with only one rotatable dihedral angle [angle]H-X-Y-H (X,Y=C,N,O). The relative contributions of the different energy components to the total energy difference as a function of the internal dihedral rotation will be considered. Both optimized-geometry (adiabatic) and fixed-geometry (vertical) differences are examined, as are the results from the conventional energy partition and natural bond orbital analysis. A wealth of strong linear relationships among the total energy difference and energy component differences for different systems have been observed but no universal relationship applicable to all systems for both cases has been discovered, indicating that even for simple systems such as these, there exists no omnipresent, unique interpretation on the nature and origin of the internal rotation barrier. Different energy components can be employed for different systems in the rationalization of the barrier height. Confirming that the two differences, adiabatic and vertical, are disparate in nature, we find that for the vertical case there is a unique linear relationship applicable to all the six molecules between the total energy difference and the sum of the kinetic and electrostatic energy differences. For the adiabatic case, it is the total potential energy difference that has been found to correlate well with the total energy difference except for ethane whose rotation barrier is dominated by the quantum effect.
pubmed:grant
pubmed:commentsCorrections
http://linkedlifedata.com/resource/pubmed/commentcorrection/19044862-11385566, http://linkedlifedata.com/resource/pubmed/commentcorrection/19044862-15267888, http://linkedlifedata.com/resource/pubmed/commentcorrection/19044862-16833715, http://linkedlifedata.com/resource/pubmed/commentcorrection/19044862-17100424, http://linkedlifedata.com/resource/pubmed/commentcorrection/19044862-17100431, http://linkedlifedata.com/resource/pubmed/commentcorrection/19044862-17305558, http://linkedlifedata.com/resource/pubmed/commentcorrection/19044862-17309192, http://linkedlifedata.com/resource/pubmed/commentcorrection/19044862-17523787, http://linkedlifedata.com/resource/pubmed/commentcorrection/19044862-17614533, http://linkedlifedata.com/resource/pubmed/commentcorrection/19044862-17696327, http://linkedlifedata.com/resource/pubmed/commentcorrection/19044862-17810052, http://linkedlifedata.com/resource/pubmed/commentcorrection/19044862-17934060, http://linkedlifedata.com/resource/pubmed/commentcorrection/19044862-18292867, http://linkedlifedata.com/resource/pubmed/commentcorrection/19044862-18361562, http://linkedlifedata.com/resource/pubmed/commentcorrection/19044862-18414735, http://linkedlifedata.com/resource/pubmed/commentcorrection/19044862-18563887
pubmed:language
eng
pubmed:journal
pubmed:citationSubset
IM
pubmed:chemical
pubmed:status
MEDLINE
pubmed:month
Sep
pubmed:issn
1089-7690
pubmed:author
pubmed:issnType
Electronic
pubmed:day
7
pubmed:volume
129
pubmed:owner
NLM
pubmed:authorsComplete
Y
pubmed:pagination
094104
pubmed:dateRevised
2010-9-23
pubmed:meshHeading
pubmed:year
2008
pubmed:articleTitle
Exploring the origin of the internal rotational barrier for molecules with one rotatable dihedral angle.
pubmed:affiliation
Renaissance Computing Institute, University of North Carolina, Chapel Hill, North Carolina 27599-3455, USA.
pubmed:publicationType
Journal Article, Research Support, U.S. Gov't, Non-P.H.S., Research Support, N.I.H., Extramural