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rdf:type |
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lifeskim:mentions |
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pubmed:dateCreated |
2008-10-6
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pubmed:abstractText |
The goal of the gene normalization task is to link genes or gene products mentioned in the literature to biological databases. This is a key step in an accurate search of the biological literature. It is a challenging task, even for the human expert; genes are often described rather than referred to by gene symbol and, confusingly, one gene name may refer to different genes (often from different organisms). For BioCreative II, the task was to list the Entrez Gene identifiers for human genes or gene products mentioned in PubMed/MEDLINE abstracts. We selected abstracts associated with articles previously curated for human genes. We provided 281 expert-annotated abstracts containing 684 gene identifiers for training, and a blind test set of 262 documents containing 785 identifiers, with a gold standard created by expert annotators. Inter-annotator agreement was measured at over 90%.
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pubmed:grant |
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pubmed:commentsCorrections |
http://linkedlifedata.com/resource/pubmed/commentcorrection/18834494-12176836,
http://linkedlifedata.com/resource/pubmed/commentcorrection/18834494-14681406,
http://linkedlifedata.com/resource/pubmed/commentcorrection/18834494-15860559,
http://linkedlifedata.com/resource/pubmed/commentcorrection/18834494-15960823,
http://linkedlifedata.com/resource/pubmed/commentcorrection/18834494-15960824,
http://linkedlifedata.com/resource/pubmed/commentcorrection/18834494-15960825,
http://linkedlifedata.com/resource/pubmed/commentcorrection/18834494-15960826,
http://linkedlifedata.com/resource/pubmed/commentcorrection/18834494-15960827,
http://linkedlifedata.com/resource/pubmed/commentcorrection/18834494-15960838,
http://linkedlifedata.com/resource/pubmed/commentcorrection/18834494-15980585,
http://linkedlifedata.com/resource/pubmed/commentcorrection/18834494-16267085,
http://linkedlifedata.com/resource/pubmed/commentcorrection/18834494-16381842,
http://linkedlifedata.com/resource/pubmed/commentcorrection/18834494-16630348,
http://linkedlifedata.com/resource/pubmed/commentcorrection/18834494-17314123
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pubmed:language |
eng
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pubmed:journal |
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pubmed:citationSubset |
IM
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pubmed:status |
MEDLINE
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pubmed:issn |
1465-6914
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pubmed:author |
pubmed-author:CohenAaron MAM,
pubmed-author:CohenK BretonnelKB,
pubmed-author:DivoliAnnaA,
pubmed-author:FluckJulianeJ,
pubmed-author:FundelKatrinK,
pubmed-author:HakenbergJörgJ,
pubmed-author:HirschmanLynetteL,
pubmed-author:HsuChun-NanCN,
pubmed-author:KrauthammerMichaelM,
pubmed-author:LauWilliam WWW,
pubmed-author:LeamanRobertR,
pubmed-author:LiuHeng-huiHH,
pubmed-author:LiuHongfangH,
pubmed-author:LuZhiyongZ,
pubmed-author:MorganAlexander AAA,
pubmed-author:RuchPatrickP,
pubmed-author:SchuemieMartijnM,
pubmed-author:SunChengjieC,
pubmed-author:TorresRafaelR,
pubmed-author:WangXinglongX
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pubmed:issnType |
Electronic
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pubmed:volume |
9 Suppl 2
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pubmed:owner |
NLM
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pubmed:authorsComplete |
Y
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pubmed:pagination |
S3
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pubmed:dateRevised |
2009-11-18
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pubmed:meshHeading |
pubmed-meshheading:18834494-Abstracting and Indexing as Topic,
pubmed-meshheading:18834494-Animals,
pubmed-meshheading:18834494-Computational Biology,
pubmed-meshheading:18834494-Databases, Genetic,
pubmed-meshheading:18834494-Genes,
pubmed-meshheading:18834494-Humans,
pubmed-meshheading:18834494-MEDLINE,
pubmed-meshheading:18834494-PubMed,
pubmed-meshheading:18834494-Reproducibility of Results,
pubmed-meshheading:18834494-Societies, Scientific
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pubmed:year |
2008
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pubmed:articleTitle |
Overview of BioCreative II gene normalization.
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pubmed:affiliation |
Biomedical Informatics, Stanford University, Stanford, CA, 94305, USA.
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pubmed:publicationType |
Journal Article,
Research Support, U.S. Gov't, Non-P.H.S.,
Research Support, Non-U.S. Gov't,
Research Support, N.I.H., Extramural
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