rdf:type |
|
lifeskim:mentions |
|
pubmed:dateCreated |
2008-4-8
|
pubmed:abstractText |
Modeling and simulation of cellular signaling and metabolic pathways as networks of biochemical reactions yields sets of non-linear ordinary differential equations. These models usually depend on several parameters and initial conditions. If these parameters are unknown, results from simulation studies can be misleading. Such a scenario can be avoided by fitting the model to experimental data before analyzing the system. This involves parameter estimation which is usually performed by minimizing a cost function which quantifies the difference between model predictions and measurements. Mathematically, this is formulated as a non-linear optimization problem which often results to be multi-modal (non-convex), rendering local optimization methods detrimental.
|
pubmed:commentsCorrections |
|
pubmed:language |
eng
|
pubmed:journal |
|
pubmed:citationSubset |
IM
|
pubmed:chemical |
|
pubmed:status |
MEDLINE
|
pubmed:issn |
1752-0509
|
pubmed:author |
|
pubmed:issnType |
Electronic
|
pubmed:volume |
2
|
pubmed:owner |
NLM
|
pubmed:authorsComplete |
Y
|
pubmed:pagination |
26
|
pubmed:dateRevised |
2009-11-18
|
pubmed:meshHeading |
pubmed-meshheading:18366722-Algorithms,
pubmed-meshheading:18366722-Computer Simulation,
pubmed-meshheading:18366722-Gene Expression Profiling,
pubmed-meshheading:18366722-Likelihood Functions,
pubmed-meshheading:18366722-Metabolic Networks and Pathways,
pubmed-meshheading:18366722-Models, Biological,
pubmed-meshheading:18366722-Nonlinear Dynamics,
pubmed-meshheading:18366722-Numerical Analysis, Computer-Assisted,
pubmed-meshheading:18366722-Predictive Value of Tests,
pubmed-meshheading:18366722-Reference Values,
pubmed-meshheading:18366722-STAT5 Transcription Factor,
pubmed-meshheading:18366722-Signal Transduction,
pubmed-meshheading:18366722-Systems Biology
|
pubmed:year |
2008
|
pubmed:articleTitle |
Hybrid optimization method with general switching strategy for parameter estimation.
|
pubmed:affiliation |
Process Engineering Group, Spanish Council for Scientific Research, IIM-CSIC, Spain. ebalsa@iim.csic.es
|
pubmed:publicationType |
Journal Article,
Research Support, Non-U.S. Gov't
|