Source:http://linkedlifedata.com/resource/pubmed/id/18205924
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rdf:type | |
lifeskim:mentions | |
pubmed:dateCreated |
2008-2-7
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pubmed:abstractText |
MAGE-ML has been promoted as a standard format for describing microarray experiments and the data they produce. Two characteristics of the MAGE-ML format compromise its use as a universal standard: First, MAGE-ML files are exceptionally large - too large to be easily read by most people, and often too large to be read by most software programs. Second, the MAGE-ML standard permits many ways of representing the same information. As a result, different producers of MAGE-ML create different documents describing the same experiment and its data. Recognizing all the variants is an unwieldy software engineering task, resulting in software packages that can read and process MAGE-ML from some, but not all producers. This Tower of MAGE-ML Babel bars the unencumbered exchange of microarray experiment descriptions couched in MAGE-ML.
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pubmed:grant | |
pubmed:commentsCorrections | |
pubmed:language |
eng
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pubmed:journal | |
pubmed:citationSubset |
IM
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pubmed:status |
MEDLINE
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pubmed:issn |
1471-2105
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pubmed:author | |
pubmed:issnType |
Electronic
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pubmed:volume |
9
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pubmed:owner |
NLM
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pubmed:authorsComplete |
Y
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pubmed:pagination |
28
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pubmed:dateRevised |
2009-11-18
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pubmed:meshHeading |
pubmed-meshheading:18205924-Animals,
pubmed-meshheading:18205924-Database Management Systems,
pubmed-meshheading:18205924-Gene Expression Profiling,
pubmed-meshheading:18205924-Humans,
pubmed-meshheading:18205924-Hypermedia,
pubmed-meshheading:18205924-Information Storage and Retrieval,
pubmed-meshheading:18205924-Oligonucleotide Array Sequence Analysis,
pubmed-meshheading:18205924-Systems Integration,
pubmed-meshheading:18205924-User-Computer Interface,
pubmed-meshheading:18205924-Work Simplification
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pubmed:year |
2008
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pubmed:articleTitle |
The XBabelPhish MAGE-ML and XML translator.
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pubmed:affiliation |
Department of Biochemistry, Stanford University School of Medicine, Stanford, CA 94305-5307, USA. dMaier@genome.stanford.edu
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pubmed:publicationType |
Journal Article,
Research Support, N.I.H., Extramural
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