Source:http://linkedlifedata.com/resource/pubmed/id/18175723
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| Predicate | Object |
|---|---|
| rdf:type | |
| lifeskim:mentions | |
| pubmed:issue |
Pt 1
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| pubmed:dateCreated |
2008-1-7
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| pubmed:databankReference | |
| pubmed:abstractText |
A non-spore-forming, Gram-negative, motile, rod-shaped, boron-accumulating bacterium isolated from soil was characterized by polyphasic taxonomy. The strain, designated BAM-48(T), was positive for catalase and oxidase activities and grew at 4-37 degrees C, 0-1% NaCl and pH 5-9. Comparative analysis of the 16S rRNA gene sequence demonstrated that the novel isolate BAM-48(T) was closely related to Variovorax paradoxus IAM 12373(T) (99.3% sequence similarity), Variovorax soli GH9-3(T) (98.3%) and Variovorax dokdonensis DS-43(T) (97.0%). DNA-DNA hybridization values between strain BAM-48(T) and V. paradoxus NBRC 15149(T), V. soli KACC 11579(T) and V. dokdonensis KCTC 12544(T) were only 49.1, 25.4 and 24.6%, respectively. The major respiratory quinone was ubiquinone 8 (Q-8). The DNA G+C content was 71.2 mol%. Strain BAM-48(T) contained C(16:0) (36.1%), C(16:1)omega7c (21.4%) and C(17:0) cyclo (19.0%) as the major fatty acids. Based on phenotypic, chemotaxonomic and phylogenetic data, strain BAM-48(T) should be classified as a member of a novel species in the genus Variovorax, for which the name Variovorax boronicumulans sp. nov. is proposed. The type strain is BAM-48(T) (=NBRC 103145(T) =KCTC 22010(T)).
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| pubmed:language |
eng
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| pubmed:journal | |
| pubmed:citationSubset |
IM
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| pubmed:chemical | |
| pubmed:status |
MEDLINE
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| pubmed:month |
Jan
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| pubmed:issn |
1466-5026
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| pubmed:author | |
| pubmed:issnType |
Print
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| pubmed:volume |
58
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| pubmed:owner |
NLM
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| pubmed:authorsComplete |
Y
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| pubmed:pagination |
286-9
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| pubmed:meshHeading |
pubmed-meshheading:18175723-Bacterial Typing Techniques,
pubmed-meshheading:18175723-Base Composition,
pubmed-meshheading:18175723-Boron,
pubmed-meshheading:18175723-Comamonadaceae,
pubmed-meshheading:18175723-DNA, Bacterial,
pubmed-meshheading:18175723-Genes, rRNA,
pubmed-meshheading:18175723-Molecular Sequence Data,
pubmed-meshheading:18175723-Nucleic Acid Hybridization,
pubmed-meshheading:18175723-Phenotype,
pubmed-meshheading:18175723-Phylogeny,
pubmed-meshheading:18175723-RNA, Ribosomal, 16S,
pubmed-meshheading:18175723-Sequence Analysis, DNA,
pubmed-meshheading:18175723-Soil Microbiology,
pubmed-meshheading:18175723-Species Specificity
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| pubmed:year |
2008
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| pubmed:articleTitle |
Variovorax boronicumulans sp. nov., a boron-accumulating bacterium isolated from soil.
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| pubmed:affiliation |
Biotechnology Research Center, The University of Tokyo, Yayoi 1-1-1, Bunkyo-Ku, Tokyo 113-8657, Japan.
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| pubmed:publicationType |
Journal Article
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