Statements in which the resource exists as a subject.
PredicateObject
rdf:type
lifeskim:mentions
pubmed:issue
24
pubmed:dateCreated
2007-12-6
pubmed:databankReference
pubmed:abstractText
The pyrE gene, encoding orotate phosphoribosyltransferase (OPRTase), was cloned by nested PCR and colony blotting from Corynebacterium ammoniagenes ATCC 6872, which is widely used in nucleotide production. Sequence analysis shows that there is a lack of an important conserved lysine (Lys 73 in Salmonella enterica serovar Typhimurium OPRTase) in the C. ammoniagenes OPRTase. This lysine has been considered to contribute to the initiation of catalysis. The enzyme was overexpressed and purified from a recombinant Escherichia coli strain. The molecular mass of the purified OPRTase was determined to be 45.4 +/- 1.5 kDa by gel filtration. Since the molecular mass for the subunit of the enzyme was 21.3 +/- 0.6 kDa, the native enzyme exists as a dimer. Divalent magnesium was necessary for the activity of the enzyme and can be substituted for by Mn2+ and Co2+. The optimal pH for the forward (phosphoribosyl transfer) reaction is 10.5 to 11.5, which is higher than that of other reported OPRTases, and the optimal pH for the reverse (pyrophosphorolysis) reaction is 5.5 to 6.5. The Km values for the four substrates were determined to be 33 microM for orotate, 64 microM for 5-phosphoribosyl-1-pyrophosphate (PRPP), 45 microM for orotidine-5-phosphate (OMP), and 36 microM for pyrophosphate. The Km value for OMP is much larger than those of other organisms. These differences may be due to the absence of Lys 73, which is present in the active sites of other OPRTases and is known to interact with OMP and PRPP.
pubmed:commentsCorrections
http://linkedlifedata.com/resource/pubmed/commentcorrection/17921291-12872993, http://linkedlifedata.com/resource/pubmed/commentcorrection/17921291-1435732, http://linkedlifedata.com/resource/pubmed/commentcorrection/17921291-14907713, http://linkedlifedata.com/resource/pubmed/commentcorrection/17921291-16618122, http://linkedlifedata.com/resource/pubmed/commentcorrection/17921291-16815056, http://linkedlifedata.com/resource/pubmed/commentcorrection/17921291-17520248, http://linkedlifedata.com/resource/pubmed/commentcorrection/17921291-2017144, http://linkedlifedata.com/resource/pubmed/commentcorrection/17921291-2182197, http://linkedlifedata.com/resource/pubmed/commentcorrection/17921291-218950, http://linkedlifedata.com/resource/pubmed/commentcorrection/17921291-2210335, http://linkedlifedata.com/resource/pubmed/commentcorrection/17921291-224912, http://linkedlifedata.com/resource/pubmed/commentcorrection/17921291-2271660, http://linkedlifedata.com/resource/pubmed/commentcorrection/17921291-2419315, http://linkedlifedata.com/resource/pubmed/commentcorrection/17921291-2665650, http://linkedlifedata.com/resource/pubmed/commentcorrection/17921291-2835631, http://linkedlifedata.com/resource/pubmed/commentcorrection/17921291-3447739, http://linkedlifedata.com/resource/pubmed/commentcorrection/17921291-3546595, http://linkedlifedata.com/resource/pubmed/commentcorrection/17921291-5094209, http://linkedlifedata.com/resource/pubmed/commentcorrection/17921291-6349999, http://linkedlifedata.com/resource/pubmed/commentcorrection/17921291-7030616, http://linkedlifedata.com/resource/pubmed/commentcorrection/17921291-7545004, http://linkedlifedata.com/resource/pubmed/commentcorrection/17921291-7545005, http://linkedlifedata.com/resource/pubmed/commentcorrection/17921291-7545006, http://linkedlifedata.com/resource/pubmed/commentcorrection/17921291-7635839, http://linkedlifedata.com/resource/pubmed/commentcorrection/17921291-7685580, http://linkedlifedata.com/resource/pubmed/commentcorrection/17921291-8057372, http://linkedlifedata.com/resource/pubmed/commentcorrection/17921291-8312245, http://linkedlifedata.com/resource/pubmed/commentcorrection/17921291-8376388, http://linkedlifedata.com/resource/pubmed/commentcorrection/17921291-8487307, http://linkedlifedata.com/resource/pubmed/commentcorrection/17921291-8555167, http://linkedlifedata.com/resource/pubmed/commentcorrection/17921291-8620002, http://linkedlifedata.com/resource/pubmed/commentcorrection/17921291-8720144, http://linkedlifedata.com/resource/pubmed/commentcorrection/17921291-8787418, http://linkedlifedata.com/resource/pubmed/commentcorrection/17921291-9305779, http://linkedlifedata.com/resource/pubmed/commentcorrection/17921291-9880805, http://linkedlifedata.com/resource/pubmed/commentcorrection/17921291-9890908, http://linkedlifedata.com/resource/pubmed/commentcorrection/17921291-9890909
pubmed:language
eng
pubmed:journal
pubmed:citationSubset
IM
pubmed:chemical
pubmed:status
MEDLINE
pubmed:month
Dec
pubmed:issn
1098-5530
pubmed:author
pubmed:issnType
Electronic
pubmed:volume
189
pubmed:owner
NLM
pubmed:authorsComplete
Y
pubmed:pagination
9030-6
pubmed:dateRevised
2009-11-18
pubmed:meshHeading
pubmed-meshheading:17921291-Bacterial Proteins, pubmed-meshheading:17921291-Cations, Divalent, pubmed-meshheading:17921291-Chromatography, Gel, pubmed-meshheading:17921291-Cloning, Molecular, pubmed-meshheading:17921291-Coenzymes, pubmed-meshheading:17921291-Conserved Sequence, pubmed-meshheading:17921291-Corynebacterium, pubmed-meshheading:17921291-Dimerization, pubmed-meshheading:17921291-Diphosphates, pubmed-meshheading:17921291-Enzyme Stability, pubmed-meshheading:17921291-Escherichia coli, pubmed-meshheading:17921291-Gene Expression, pubmed-meshheading:17921291-Hydrogen-Ion Concentration, pubmed-meshheading:17921291-Kinetics, pubmed-meshheading:17921291-Lysine, pubmed-meshheading:17921291-Molecular Sequence Data, pubmed-meshheading:17921291-Molecular Weight, pubmed-meshheading:17921291-Orotate Phosphoribosyltransferase, pubmed-meshheading:17921291-Orotic Acid, pubmed-meshheading:17921291-Phosphoribosyl Pyrophosphate, pubmed-meshheading:17921291-Recombinant Proteins, pubmed-meshheading:17921291-Sequence Analysis, DNA, pubmed-meshheading:17921291-Uridine Monophosphate
pubmed:year
2007
pubmed:articleTitle
Orotate phosphoribosyltransferase from Corynebacterium ammoniagenes lacking a conserved lysine.
pubmed:affiliation
Institute of Microbiology, Chinese Academy of Sciences, Beijing 100080, People's Republic of China.
pubmed:publicationType
Journal Article, Research Support, Non-U.S. Gov't