Source:http://linkedlifedata.com/resource/pubmed/id/17646296
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Predicate | Object |
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rdf:type | |
lifeskim:mentions | |
pubmed:issue |
13
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pubmed:dateCreated |
2007-7-24
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pubmed:abstractText |
Accurate prediction of RNA secondary structure from the base sequence is an unsolved computational challenge. The accuracy of predictions made by free energy minimization is limited by the quality of the energy parameters in the underlying free energy model. The most widely used model, the Turner99 model, has hundreds of parameters, and so a robust parameter estimation scheme should efficiently handle large data sets with thousands of structures. Moreover, the estimation scheme should also be trained using available experimental free energy data in addition to structural data.
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pubmed:grant | |
pubmed:language |
eng
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pubmed:journal | |
pubmed:citationSubset |
IM
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pubmed:chemical | |
pubmed:status |
MEDLINE
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pubmed:month |
Jul
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pubmed:issn |
1367-4811
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pubmed:author | |
pubmed:issnType |
Electronic
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pubmed:day |
1
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pubmed:volume |
23
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pubmed:owner |
NLM
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pubmed:authorsComplete |
Y
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pubmed:pagination |
i19-28
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pubmed:dateRevised |
2009-11-4
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pubmed:meshHeading |
pubmed-meshheading:17646296-Algorithms,
pubmed-meshheading:17646296-Base Sequence,
pubmed-meshheading:17646296-Computer Simulation,
pubmed-meshheading:17646296-Models, Chemical,
pubmed-meshheading:17646296-Models, Molecular,
pubmed-meshheading:17646296-Molecular Sequence Data,
pubmed-meshheading:17646296-Nucleic Acid Conformation,
pubmed-meshheading:17646296-RNA,
pubmed-meshheading:17646296-Sequence Analysis, RNA
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pubmed:year |
2007
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pubmed:articleTitle |
Efficient parameter estimation for RNA secondary structure prediction.
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pubmed:affiliation |
Department of Computer Science, University of British Columbia, Vancouver BC V6T 1Z4, Canada. andrones@cs.ubc.ca
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pubmed:publicationType |
Journal Article,
Research Support, Non-U.S. Gov't,
Research Support, N.I.H., Extramural
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