rdf:type |
|
lifeskim:mentions |
umls-concept:C0014834,
umls-concept:C0043240,
umls-concept:C0208356,
umls-concept:C0374711,
umls-concept:C0442650,
umls-concept:C0678594,
umls-concept:C0723457,
umls-concept:C1145667,
umls-concept:C1167622,
umls-concept:C1705181,
umls-concept:C1947925,
umls-concept:C2349209,
umls-concept:C2746065,
umls-concept:C2825311
|
pubmed:issue |
2
|
pubmed:dateCreated |
2007-4-30
|
pubmed:databankReference |
|
pubmed:abstractText |
NAD(+)-dependent DNA ligases (LigA) are ubiquitous in bacteria and essential for growth. Their distinctive substrate specificity and domain organization vis-a-vis human ATP-dependent ligases make them outstanding targets for anti-infective drug discovery. We report here the 2.3 A crystal structure of Escherichia coli LigA bound to an adenylylated nick, which captures LigA in a state poised for strand closure and reveals the basis for nick recognition. LigA envelopes the DNA within a protein clamp. Large protein domain movements and remodeling of the active site orchestrate progression through the three chemical steps of the ligation reaction. The structure inspires a strategy for inhibitor design.
|
pubmed:grant |
|
pubmed:language |
eng
|
pubmed:journal |
|
pubmed:citationSubset |
IM
|
pubmed:chemical |
|
pubmed:status |
MEDLINE
|
pubmed:month |
Apr
|
pubmed:issn |
1097-2765
|
pubmed:author |
|
pubmed:issnType |
Print
|
pubmed:day |
27
|
pubmed:volume |
26
|
pubmed:owner |
NLM
|
pubmed:authorsComplete |
Y
|
pubmed:pagination |
257-71
|
pubmed:dateRevised |
2007-12-3
|
pubmed:meshHeading |
pubmed-meshheading:17466627-Adenine Nucleotides,
pubmed-meshheading:17466627-Base Sequence,
pubmed-meshheading:17466627-Catalytic Domain,
pubmed-meshheading:17466627-Crystallography, X-Ray,
pubmed-meshheading:17466627-DNA, Bacterial,
pubmed-meshheading:17466627-DNA Breaks, Single-Stranded,
pubmed-meshheading:17466627-DNA Ligases,
pubmed-meshheading:17466627-DNA Repair,
pubmed-meshheading:17466627-Escherichia coli,
pubmed-meshheading:17466627-Escherichia coli Proteins,
pubmed-meshheading:17466627-Humans,
pubmed-meshheading:17466627-Models, Molecular,
pubmed-meshheading:17466627-Nucleic Acid Conformation,
pubmed-meshheading:17466627-Protein Conformation,
pubmed-meshheading:17466627-Protein Structure, Tertiary,
pubmed-meshheading:17466627-Species Specificity
|
pubmed:year |
2007
|
pubmed:articleTitle |
Last stop on the road to repair: structure of E. coli DNA ligase bound to nicked DNA-adenylate.
|
pubmed:affiliation |
Molecular Biology Program, Sloan-Kettering Institute, New York, NY 10021, USA.
|
pubmed:publicationType |
Journal Article,
Comparative Study,
Research Support, N.I.H., Extramural
|