Statements in which the resource exists as a subject.
PredicateObject
rdf:type
lifeskim:mentions
pubmed:issue
1
pubmed:dateCreated
2007-3-26
pubmed:databankReference
pubmed:abstractText
Formation of a flat beta-sheet is a fundamental event in beta-sheet-mediated protein self-assembly. To investigate the contributions of various factors to the stability of flat beta-sheets, we performed extensive alanine-scanning mutagenesis experiments on the single-layer beta-sheet segment of Borrelia outer surface protein A (OspA). This beta-sheet segment consists of beta-strands with highly regular geometries that can serve as a building block for self-assembly. Our Ala-scanning approach is distinct from the conventional host-guest method, in that it introduces only conservative, truncation mutations that should minimize structural perturbation. Our results showed very weak correlation with experimental beta-sheet propensity scales, statistical beta-sheet propensity scales, or cross-strand pairwise correlations. In contrast, our data showed strong positive correlation with the change in buried non-polar surface area. Polar interactions including prominent Glu-Lys cross-strand pairs contribute marginally to the beta-sheet stability. These results were corroborated by results from additional non-Ala mutations. Taken together, these results demonstrate the dominant contribution of non-polar surface burial to flat beta-sheet stability even at solvent-exposed positions. The OspA single-layer beta-sheet achieves efficient hydrophobic surface burial without forming a hydrophobic core by a strategic placement of a variety of side-chains. These findings further suggest the importance of hydrophobic interactions within a beta-sheet layer in peptide self-assembly.
pubmed:grant
pubmed:commentsCorrections
http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-10200164, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-10422826, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-10438632, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-10667801, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-10704314, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-10751943, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-10861930, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-10926522, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-11162120, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-11297935, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-11373623, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-11484218, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-11535071, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-11567099, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-11880627, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-11880628, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-12215423, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-12324994, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-12381326, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-12501158, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-12917692, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-12948494, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-14500877, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-14685248, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-14691246, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-15099747, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-15299926, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-15302561, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-15314218, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-15523917, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-15572765, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-15644216, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-15944695, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-16008354, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-16204814, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-16263932, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-16434184, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-16476445, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-16491088, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-16563741, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-16823038, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-17093048, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-1988675, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-2207096, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-2217164, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-364941, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-4358940, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-5551392, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-7481801, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-7567960, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-7727432, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-7731949, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-7756980, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-7761829, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-8003958, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-8078589, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-8107853, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-8180173, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-8251933, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-8459852, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-8535251, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-8745398, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-9108020, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-9461076, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-9714157, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-9757107, http://linkedlifedata.com/resource/pubmed/commentcorrection/17335845-9761471
pubmed:language
eng
pubmed:journal
pubmed:citationSubset
IM
pubmed:chemical
pubmed:status
MEDLINE
pubmed:month
Apr
pubmed:issn
0022-2836
pubmed:author
More...