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rdf:type |
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lifeskim:mentions |
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pubmed:issue |
3
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pubmed:dateCreated |
2007-5-14
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pubmed:databankReference |
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pubmed:abstractText |
The massively parallel signature sequencing (MPSS) provides a greater depth of coverage than expressed sequence tag scan or microarray and provides a comprehensive expression profile. We used the MPSS technology to uncover gene expression profiling in the early embryonic gonads and primordial germ cells (PGCs) in the chicken. Total numbers of sequenced signatures were 1,012,533 and 995,676 for the PGCs and gonad, respectively. Using a noise distribution model, we found that 1.67% of all signatures are expressed at a higher level in PCGs and 2.81% of all signatures are expressed at a higher level in the gonad. The MPSS data are presented via an interactive web interface available at http://snugenome.snu.ac.kr/MPSS. The MPSS data have been submitted to the Gene Expression Omnibus of the National Center for Biotechnology Information (accession number GSM137300 and GSM137301 for PGCs and gonad, respectively).
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pubmed:language |
eng
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pubmed:journal |
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pubmed:citationSubset |
IM
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pubmed:chemical |
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pubmed:status |
MEDLINE
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pubmed:month |
May
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pubmed:issn |
1531-2267
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pubmed:author |
pubmed-author:HanJae YongJY,
pubmed-author:JungJin GyoungJG,
pubmed-author:KangYeonkyungY,
pubmed-author:KimHeebalH,
pubmed-author:KimJin NamJN,
pubmed-author:KimMi AMA,
pubmed-author:KimTae MinTM,
pubmed-author:LeeSeon DukSD,
pubmed-author:LeeWoon KyuWK,
pubmed-author:LimJeong MookJM,
pubmed-author:MoonSunjinS,
pubmed-author:NamJungryeJ,
pubmed-author:ParkKyung JeKJ,
pubmed-author:ParkSang HyunSH,
pubmed-author:ParkTae SubTS,
pubmed-author:ShinJi HyeJH,
pubmed-author:ShinSang SuSS
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pubmed:issnType |
Electronic
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pubmed:day |
11
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pubmed:volume |
29
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pubmed:owner |
NLM
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pubmed:authorsComplete |
Y
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pubmed:pagination |
253-9
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pubmed:meshHeading |
pubmed-meshheading:17264242-Alternative Splicing,
pubmed-meshheading:17264242-Animals,
pubmed-meshheading:17264242-Cells, Cultured,
pubmed-meshheading:17264242-Chick Embryo,
pubmed-meshheading:17264242-Chromosome Mapping,
pubmed-meshheading:17264242-Databases, Genetic,
pubmed-meshheading:17264242-Gene Expression Profiling,
pubmed-meshheading:17264242-Gene Expression Regulation, Developmental,
pubmed-meshheading:17264242-Gene Library,
pubmed-meshheading:17264242-Germ Cells,
pubmed-meshheading:17264242-Gonads,
pubmed-meshheading:17264242-RNA, Messenger,
pubmed-meshheading:17264242-Sequence Analysis, DNA
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pubmed:year |
2007
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pubmed:articleTitle |
MPSS profiling of embryonic gonad and primordial germ cells in chicken.
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pubmed:affiliation |
Department of Agricultural Biotechnology, Seoul National University, Seoul, Korea.
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pubmed:publicationType |
Journal Article,
Research Support, Non-U.S. Gov't
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