Source:http://linkedlifedata.com/resource/pubmed/id/17234640
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| Predicate | Object |
|---|---|
| rdf:type | |
| lifeskim:mentions | |
| pubmed:issue |
11
|
| pubmed:dateCreated |
2007-6-22
|
| pubmed:abstractText |
The exponential growth of sequence databases poses a major challenge to bioinformatics tools for querying alignment and annotation databases. There is a pressing need for methods for finding overlapping sequence intervals that are highly scalable to database size, query interval size, result size and construction/updating of the interval database.
|
| pubmed:grant | |
| pubmed:language |
eng
|
| pubmed:journal | |
| pubmed:citationSubset |
IM
|
| pubmed:status |
MEDLINE
|
| pubmed:month |
Jun
|
| pubmed:issn |
1367-4811
|
| pubmed:author | |
| pubmed:issnType |
Electronic
|
| pubmed:day |
1
|
| pubmed:volume |
23
|
| pubmed:owner |
NLM
|
| pubmed:authorsComplete |
Y
|
| pubmed:pagination |
1386-93
|
| pubmed:dateRevised |
2009-11-4
|
| pubmed:meshHeading |
pubmed-meshheading:17234640-Algorithms,
pubmed-meshheading:17234640-Base Sequence,
pubmed-meshheading:17234640-Chromosome Mapping,
pubmed-meshheading:17234640-Database Management Systems,
pubmed-meshheading:17234640-Databases, Genetic,
pubmed-meshheading:17234640-Information Storage and Retrieval,
pubmed-meshheading:17234640-Molecular Sequence Data,
pubmed-meshheading:17234640-Sequence Alignment,
pubmed-meshheading:17234640-Sequence Analysis, DNA,
pubmed-meshheading:17234640-Software
|
| pubmed:year |
2007
|
| pubmed:articleTitle |
Nested Containment List (NCList): a new algorithm for accelerating interval query of genome alignment and interval databases.
|
| pubmed:affiliation |
Department of Biomathematics, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA 90095-1570, USA.
|
| pubmed:publicationType |
Journal Article,
Research Support, U.S. Gov't, Non-P.H.S.,
Research Support, N.I.H., Extramural
|