Statements in which the resource exists as a subject.
PredicateObject
rdf:type
lifeskim:mentions
pubmed:issue
Database issue
pubmed:dateCreated
2007-1-4
pubmed:abstractText
BindingDB (http://www.bindingdb.org) is a publicly accessible database currently containing approximately 20,000 experimentally determined binding affinities of protein-ligand complexes, for 110 protein targets including isoforms and mutational variants, and approximately 11,000 small molecule ligands. The data are extracted from the scientific literature, data collection focusing on proteins that are drug-targets or candidate drug-targets and for which structural data are present in the Protein Data Bank. The BindingDB website supports a range of query types, including searches by chemical structure, substructure and similarity; protein sequence; ligand and protein names; affinity ranges and molecular weight. Data sets generated by BindingDB queries can be downloaded in the form of annotated SDfiles for further analysis, or used as the basis for virtual screening of a compound database uploaded by the user. The data in BindingDB are linked both to structural data in the PDB via PDB IDs and chemical and sequence searches, and to the literature in PubMed via PubMed IDs.
pubmed:grant
pubmed:commentsCorrections
http://linkedlifedata.com/resource/pubmed/commentcorrection/17145705-10592235, http://linkedlifedata.com/resource/pubmed/commentcorrection/17145705-11604029, http://linkedlifedata.com/resource/pubmed/commentcorrection/17145705-11812264, http://linkedlifedata.com/resource/pubmed/commentcorrection/17145705-11836221, http://linkedlifedata.com/resource/pubmed/commentcorrection/17145705-15163179, http://linkedlifedata.com/resource/pubmed/commentcorrection/17145705-15556481, http://linkedlifedata.com/resource/pubmed/commentcorrection/17145705-15667143, http://linkedlifedata.com/resource/pubmed/commentcorrection/17145705-15943484, http://linkedlifedata.com/resource/pubmed/commentcorrection/17145705-16158097, http://linkedlifedata.com/resource/pubmed/commentcorrection/17145705-16381925, http://linkedlifedata.com/resource/pubmed/commentcorrection/17145705-16381956, http://linkedlifedata.com/resource/pubmed/commentcorrection/17145705-2196374, http://linkedlifedata.com/resource/pubmed/commentcorrection/17145705-875032
pubmed:language
eng
pubmed:journal
pubmed:citationSubset
IM
pubmed:chemical
pubmed:status
MEDLINE
pubmed:month
Jan
pubmed:issn
1362-4962
pubmed:author
pubmed:issnType
Electronic
pubmed:volume
35
pubmed:owner
NLM
pubmed:authorsComplete
Y
pubmed:pagination
D198-201
pubmed:dateRevised
2010-9-15
pubmed:meshHeading
pubmed:year
2007
pubmed:articleTitle
BindingDB: a web-accessible database of experimentally determined protein-ligand binding affinities.
pubmed:affiliation
Center for Advanced Research in Biotechnology, University of Maryland Biotechnology Institute, 9600 Gudelsky Drive, Rockville, MD 20850, USA.
pubmed:publicationType
Journal Article, Research Support, U.S. Gov't, Non-P.H.S., Research Support, N.I.H., Extramural