Statements in which the resource exists as a subject.
PredicateObject
rdf:type
lifeskim:mentions
pubmed:issue
3
pubmed:dateCreated
2007-2-22
pubmed:abstractText
PPO (protoporphyrinogen IX oxidase) catalyses the flavin-dependent six-electron oxidation of protogen (protoporphyrinogen IX) to form proto (protoporphyrin IX), a crucial step in haem and chlorophyll biosynthesis. The apparent K(m) value for wild-type tobacco PPO2 (mitochondrial PPO) was 1.17 muM, with a V(max) of 4.27 muM.min(-1).mg(-1) and a catalytic activity k(cat) of 6.0 s(-1). Amino acid residues that appear important for substrate binding in a crystal structure-based model of the substrate docked in the active site were interrogated by site-directed mutagenesis. PPO2 variant F392H did not reveal detectable enzyme activity indicating an important role of Phe(392) in substrate ring A stacking. Mutations of Leu(356), Leu(372) and Arg(98) increased k(cat) values up to 100-fold, indicating that the native residues are not essential for establishing an orientation of the substrate conductive to catalysis. Increased K(m) values of these PPO2 variants from 2- to 100-fold suggest that these residues are involved in, but not essential to, substrate binding via rings B and C. Moreover, one prominent structural constellation of human PPO causing the disease variegate porphyria (N67W/S374D) was successfully transferred into the tobacco PPO2 background. Therefore tobacco PPO2 represents a useful model system for the understanding of the structure-function relationship underlying detrimental human enzyme defects.
pubmed:commentsCorrections
http://linkedlifedata.com/resource/pubmed/commentcorrection/17134376-11506917, http://linkedlifedata.com/resource/pubmed/commentcorrection/17134376-12196143, http://linkedlifedata.com/resource/pubmed/commentcorrection/17134376-12357337, http://linkedlifedata.com/resource/pubmed/commentcorrection/17134376-12922165, http://linkedlifedata.com/resource/pubmed/commentcorrection/17134376-12975365, http://linkedlifedata.com/resource/pubmed/commentcorrection/17134376-1459957, http://linkedlifedata.com/resource/pubmed/commentcorrection/17134376-14633981, http://linkedlifedata.com/resource/pubmed/commentcorrection/17134376-14633982, http://linkedlifedata.com/resource/pubmed/commentcorrection/17134376-15057273, http://linkedlifedata.com/resource/pubmed/commentcorrection/17134376-15194701, http://linkedlifedata.com/resource/pubmed/commentcorrection/17134376-15967800, http://linkedlifedata.com/resource/pubmed/commentcorrection/17134376-234450, http://linkedlifedata.com/resource/pubmed/commentcorrection/17134376-2439126, http://linkedlifedata.com/resource/pubmed/commentcorrection/17134376-3606986, http://linkedlifedata.com/resource/pubmed/commentcorrection/17134376-3907404, http://linkedlifedata.com/resource/pubmed/commentcorrection/17134376-3955232, http://linkedlifedata.com/resource/pubmed/commentcorrection/17134376-3996415, http://linkedlifedata.com/resource/pubmed/commentcorrection/17134376-4099256, http://linkedlifedata.com/resource/pubmed/commentcorrection/17134376-6461, http://linkedlifedata.com/resource/pubmed/commentcorrection/17134376-6703698, http://linkedlifedata.com/resource/pubmed/commentcorrection/17134376-7354807, http://linkedlifedata.com/resource/pubmed/commentcorrection/17134376-7433635, http://linkedlifedata.com/resource/pubmed/commentcorrection/17134376-7798202, http://linkedlifedata.com/resource/pubmed/commentcorrection/17134376-8673113, http://linkedlifedata.com/resource/pubmed/commentcorrection/17134376-8771201, http://linkedlifedata.com/resource/pubmed/commentcorrection/17134376-8817334, http://linkedlifedata.com/resource/pubmed/commentcorrection/17134376-9238074, http://linkedlifedata.com/resource/pubmed/commentcorrection/17134376-9250999, http://linkedlifedata.com/resource/pubmed/commentcorrection/17134376-9784236, http://linkedlifedata.com/resource/pubmed/commentcorrection/17134376-9811936
pubmed:language
eng
pubmed:journal
pubmed:citationSubset
IM
pubmed:chemical
pubmed:status
MEDLINE
pubmed:month
Mar
pubmed:issn
1470-8728
pubmed:author
pubmed:issnType
Electronic
pubmed:day
15
pubmed:volume
402
pubmed:owner
NLM
pubmed:authorsComplete
Y
pubmed:pagination
575-80
pubmed:dateRevised
2009-11-18
pubmed:meshHeading
pubmed:year
2007
pubmed:articleTitle
Functional definition of the tobacco protoporphyrinogen IX oxidase substrate-binding site.
pubmed:affiliation
Institute of Microbiology, Technical University Braunschweig, Spielmannstr. 7, 38106 Braunschweig, Germany.
pubmed:publicationType
Journal Article, Research Support, Non-U.S. Gov't