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pubmed-article:17094804pubmed:abstractTextDNA methylation plays an important role in development and tumorigenesis by epigenetic modification and silencing of critical genes. The development of PCR-based methylation assays on bisulphite modified DNA heralded a breakthrough in speed and sensitivity for gene methylation analysis. Despite this technological advancement, these approaches require a cumbersome gene by gene primer design and experimental validation. Bisulphite DNA modification results in sequence alterations (all unmethylated cytosines are converted into uracils) and a general sequence complexity reduction as cytosines become underrepresented. Consequently, standard BLAST sequence homology searches cannot be applied to search for specific methylation primers.lld:pubmed
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pubmed-article:17094804pubmed:articleTitlemethBLAST and methPrimerDB: web-tools for PCR based methylation analysis.lld:pubmed
pubmed-article:17094804pubmed:affiliationCenter for Medical Genetics, Ghent University Hospital, De Pintelaan 185, 9000 Ghent, Belgium. Filip.Pattyn@UGent.be <Filip.Pattyn@UGent.be>lld:pubmed
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