Linked Life Data

16156818

Source:http://linkedlifedata.com/resource/pubmed/id/16156818

Statements in which the resource exists as a subject.
PredicateObject
rdf:type
lifeskim:mentions
pubmed:issue
11
pubmed:dateCreated
2005-9-13
pubmed:databankReference
http://linkedlifedata.com/resource/pubmed/xref/GENBANK/DQ060039, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/DQ060040, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/DQ060041, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/DQ060042, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/DQ060043, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/DQ060044, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/DQ060045, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/DQ060046, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/DQ060047, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/DQ060048, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/DQ060049, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/DQ060050, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/DQ060051, http://linkedlifedata.com/resource/pubmed/xref/GENBANK/DQ060052
pubmed:abstractText
Jack pine (Pinus banksiana Lamb.) is a broadly distributed North American conifer and its current range was covered by the Laurentian ice sheet during the last glacial maximum. To infer about the history and postglacial colonization of this boreal species, range-wide genetic variation was assessed using a new and highly variable minisatellite-like marker of the mitochondrial genome. Among the 543 trees analysed, 14 distinct haplotypes were detected, which corresponded to different repeat numbers of the 32-nucleotide minisatellite-like motif. Several haplotypes were rare with limited distribution, suggesting recent mutation events during the Holocene. At the population level, an average of 2.6 haplotypes and a mean haplotype diversity (H) of 0.328 were estimated. Population subdivision of genetic diversity was quite high with G(ST) and R(ST) values of 0.569 and 0.472, respectively. Spatial analyses identified three relatively homogeneous groups of populations presumably representative of genetically distinct glacial populations, one west and one east of the Appalachian Mountains in the United States and a third one presumably on the unglaciated northeastern coastal area in Canada. These results indicate the significant role of the northern part of the US Appalachian Mountains as a factor of vicariance during the ice age. A fourth distinct group of populations was observed in central Québec where the continental glacier retreated last. It included populations harbouring haplotypes present into the three previous groups, and it had higher level of haplotype diversity per population (H = 0.548) and lower population differentiation (G(ST) = 0.265), which indicates a zone of suture or secondary contact between the migration fronts of the three glacial populations. Introgression from Pinus contorta Dougl. var. latifolia Engelm. was apparent in one western population from Alberta. Altogether, these results indicate that the mitochondrial DNA variation of jack pine is geographically highly structured and it correlates well with large-scale patterns emerging from recent phylogeographical studies of other tree boreal species in North America.
pubmed:language
eng
pubmed:journal
pubmed:citationSubset
IM
pubmed:chemical
pubmed:status
MEDLINE
pubmed:month
Oct
pubmed:issn
0962-1083
pubmed:author
pubmed:issnType
Print
pubmed:volume
14
pubmed:owner
NLM
pubmed:authorsComplete
Y
pubmed:pagination
3497-512
pubmed:dateRevised
2008-11-21
pubmed:meshHeading
pubmed:year
2005
pubmed:articleTitle
A mitochondrial DNA minisatellite reveals the postglacial history of jack pine (Pinus banksiana), a broad-range North American conifer.
pubmed:affiliation
Chaire de recherche du Canada en génomique forestière et environnementale and Centre de recherche en biologie forestière, Pavillon C.-E. Marchand, Université Laval, Sainte-Foy, Québec, Canada G1K 7P4.
pubmed:publicationType
Journal Article, Comparative Study, Research Support, Non-U.S. Gov't