Statements in which the resource exists as a subject.
PredicateObject
rdf:type
lifeskim:mentions
pubmed:issue
43
pubmed:dateCreated
2005-10-24
pubmed:databankReference
pubmed:abstractText
Factor XIa (FXIa) is a serine protease important for initiating the intrinsic pathway of blood coagulation. Protease nexin 2 (PN2) is a Kunitz-type protease inhibitor secreted by activated platelets and a physiologically important inhibitor of FXIa. Inhibition of FXIa by PN2 requires interactions between the two proteins that are confined to the catalytic domain of the enzyme and the Kunitz protease inhibitor (KPI) domain of PN2. Recombinant PN2KPI and a mutant form of the FXI catalytic domain (FXIac) were expressed in yeast, purified to homogeneity, co-crystallized, and the structure of the complex was solved at 2.6 angstroms (Protein Data Bank code 1ZJD). In this complex, PN2KPI has a characteristic, disulfide-stabilized double loop structure that fits into the FXIac active site. To determine the contributions of residues within PN2KPI to its inhibitory activity, selected point mutations in PN2KPI loop 1 11TGPCRAMISR20 and loop 2 34FYGGC38 were tested for their ability to inhibit FXIa. The P1 site mutation R15A completely abolished its ability to inhibit FXIa. IC50 values for the wild type protein and the remaining mutants were as follows: PN2KPI WT, 1.28 nM; P13A, 5.92 nM; M17A, 1.62 nM; S19A, 1.86 nM; R20A, 5.67 nM; F34A, 9.85 nM. The IC50 values for the M17A and S19A mutants were not significantly different from those obtained with wild type PN2KPI. These functional studies and activated partial thromboplastin time analysis validate predictions made from the PN2KPI-FXIac co-crystal structure and implicate PN2KPI residues, in descending order of importance, Arg15, Phe34, Pro13, and Arg20 in FXIa inhibition by PN2KPI.
pubmed:grant
pubmed:language
eng
pubmed:journal
pubmed:citationSubset
IM
pubmed:chemical
http://linkedlifedata.com/resource/pubmed/chemical/Alanine, http://linkedlifedata.com/resource/pubmed/chemical/Arginine, http://linkedlifedata.com/resource/pubmed/chemical/Carrier Proteins, http://linkedlifedata.com/resource/pubmed/chemical/Disulfides, http://linkedlifedata.com/resource/pubmed/chemical/Factor XIa, http://linkedlifedata.com/resource/pubmed/chemical/Lysine, http://linkedlifedata.com/resource/pubmed/chemical/Phenylalanine, http://linkedlifedata.com/resource/pubmed/chemical/Proline, http://linkedlifedata.com/resource/pubmed/chemical/Recombinant Proteins, http://linkedlifedata.com/resource/pubmed/chemical/Serine, http://linkedlifedata.com/resource/pubmed/chemical/Serine Proteinase Inhibitors, http://linkedlifedata.com/resource/pubmed/chemical/Thromboplastin, http://linkedlifedata.com/resource/pubmed/chemical/Vesicular Transport Proteins
pubmed:status
MEDLINE
pubmed:month
Oct
pubmed:issn
0021-9258
pubmed:author
pubmed:issnType
Print
pubmed:day
28
pubmed:volume
280
pubmed:owner
NLM
pubmed:authorsComplete
Y
pubmed:pagination
36165-75
pubmed:dateRevised
2007-11-14
pubmed:meshHeading
pubmed-meshheading:16085935-Alanine, pubmed-meshheading:16085935-Alzheimer Disease, pubmed-meshheading:16085935-Arginine, pubmed-meshheading:16085935-Binding Sites, pubmed-meshheading:16085935-Carrier Proteins, pubmed-meshheading:16085935-Catalytic Domain, pubmed-meshheading:16085935-Crystallography, X-Ray, pubmed-meshheading:16085935-DNA Mutational Analysis, pubmed-meshheading:16085935-Disulfides, pubmed-meshheading:16085935-Dose-Response Relationship, Drug, pubmed-meshheading:16085935-Factor XIa, pubmed-meshheading:16085935-Humans, pubmed-meshheading:16085935-Inhibitory Concentration 50, pubmed-meshheading:16085935-Kinetics, pubmed-meshheading:16085935-Lysine, pubmed-meshheading:16085935-Models, Molecular, pubmed-meshheading:16085935-Models, Statistical, pubmed-meshheading:16085935-Mutation, pubmed-meshheading:16085935-Partial Thromboplastin Time, pubmed-meshheading:16085935-Phenylalanine, pubmed-meshheading:16085935-Plasmids, pubmed-meshheading:16085935-Point Mutation, pubmed-meshheading:16085935-Proline, pubmed-meshheading:16085935-Protein Binding, pubmed-meshheading:16085935-Protein Conformation, pubmed-meshheading:16085935-Protein Structure, Tertiary, pubmed-meshheading:16085935-Recombinant Proteins, pubmed-meshheading:16085935-Serine, pubmed-meshheading:16085935-Serine Proteinase Inhibitors, pubmed-meshheading:16085935-Structure-Activity Relationship, pubmed-meshheading:16085935-Thromboplastin, pubmed-meshheading:16085935-Time Factors, pubmed-meshheading:16085935-Vesicular Transport Proteins
pubmed:year
2005
pubmed:articleTitle
Structural and mutational analyses of the molecular interactions between the catalytic domain of factor XIa and the Kunitz protease inhibitor domain of protease nexin 2.
pubmed:affiliation
Sol Sherry Thrombosis Research Center, Temple University School of Medicine, Philadelphia, Pennsylvania 19140, USA.
pubmed:publicationType
Journal Article, Research Support, U.S. Gov't, P.H.S., Research Support, N.I.H., Extramural