Source:http://linkedlifedata.com/resource/pubmed/id/16000016
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Predicate | Object |
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rdf:type | |
lifeskim:mentions | |
pubmed:issue |
1
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pubmed:dateCreated |
2005-7-7
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pubmed:abstractText |
Visualisation of biological networks is becoming a common task for the analysis of high-throughput data. These networks correspond to a wide variety of biological relationships, such as sequence similarity, metabolic pathways, gene regulatory cascades and protein interactions. We present a general approach for the representation and analysis of networks of variable type, size and complexity. The application is based on the original BioLayout program (C-language implementation of the Fruchterman-Rheingold layout algorithm), entirely re-written in Java to guarantee portability across platforms. BioLayout(Java) provides broader functionality, various analysis techniques, extensions for better visualisation and a new user interface. Examples of analysis of biological networks using BioLayout(Java) are presented.
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pubmed:language |
eng
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pubmed:journal | |
pubmed:citationSubset |
IM
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pubmed:chemical | |
pubmed:status |
MEDLINE
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pubmed:issn |
1175-5636
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pubmed:author | |
pubmed:issnType |
Print
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pubmed:volume |
4
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pubmed:owner |
NLM
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pubmed:authorsComplete |
Y
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pubmed:pagination |
71-4
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pubmed:meshHeading |
pubmed-meshheading:16000016-Computer Graphics,
pubmed-meshheading:16000016-Gene Expression Regulation,
pubmed-meshheading:16000016-Programming Languages,
pubmed-meshheading:16000016-Proteome,
pubmed-meshheading:16000016-Signal Transduction,
pubmed-meshheading:16000016-Software,
pubmed-meshheading:16000016-Structure-Activity Relationship,
pubmed-meshheading:16000016-User-Computer Interface
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pubmed:year |
2005
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pubmed:articleTitle |
BioLayout(Java): versatile network visualisation of structural and functional relationships.
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pubmed:affiliation |
Computational Genomics Group, European Bioinformatics Institute, EMBL Cambridge Outstation, Cambridge, UK.
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pubmed:publicationType |
Journal Article
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