Source:http://linkedlifedata.com/resource/pubmed/id/15759641
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rdf:type | |
lifeskim:mentions | |
pubmed:dateCreated |
2005-3-11
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pubmed:abstractText |
The prediction of protein function from structure or sequence data remains a problem best addressed by leveraging information available from previously determined structure-function relationships. In the case of enzymes, the study of mechanistically diverse superfamilies can provide a rich source of structure-function information useful in functional determination and enzyme engineering. To access these relationships using a computational resource, several issues must be addressed regarding the representation of enzyme function, the organization of structure-function relationships in the superfamily context, the handling of misannotations, and reliability of classifications and evidence. We discuss here our approaches to solving these problems in the development of a Structure-Function Linkage Database (SFLD) (online at http://sfld.rbvi.ucsf.edu).
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pubmed:grant | |
pubmed:language |
eng
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pubmed:journal | |
pubmed:citationSubset |
IM
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pubmed:chemical | |
pubmed:status |
MEDLINE
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pubmed:issn |
1793-5091
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pubmed:author | |
pubmed:issnType |
Print
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pubmed:owner |
NLM
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pubmed:authorsComplete |
Y
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pubmed:pagination |
358-69
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pubmed:dateRevised |
2007-11-14
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pubmed:meshHeading |
pubmed-meshheading:15759641-Amino Acid Sequence,
pubmed-meshheading:15759641-Catalysis,
pubmed-meshheading:15759641-Computational Biology,
pubmed-meshheading:15759641-Conserved Sequence,
pubmed-meshheading:15759641-Enzymes,
pubmed-meshheading:15759641-Kinetics,
pubmed-meshheading:15759641-Protein Engineering,
pubmed-meshheading:15759641-Software,
pubmed-meshheading:15759641-Structure-Activity Relationship
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pubmed:year |
2005
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pubmed:articleTitle |
Representing structure-function relationships in mechanistically diverse enzyme superfamilies.
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pubmed:affiliation |
Dept of Biopharmaceutical Sciences, University of California, San Francisco 94143, USA.
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pubmed:publicationType |
Journal Article,
Research Support, U.S. Gov't, P.H.S.,
Research Support, U.S. Gov't, Non-P.H.S.
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