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PredicateObject
rdf:type
lifeskim:mentions
pubmed:issue
11
pubmed:dateCreated
2005-3-14
pubmed:abstractText
Pichia stipitis NAD(+)-dependent xylitol dehydrogenase (XDH), a medium-chain dehydrogenase/reductase, is one of the key enzymes in ethanol fermentation from xylose. For the construction of an efficient biomass-ethanol conversion system, we focused on the two areas of XDH, 1) change of coenzyme specificity from NAD(+) to NADP(+) and 2) thermostabilization by introducing an additional zinc atom. Site-directed mutagenesis was used to examine the roles of Asp(207), Ile(208), Phe(209), and Asn(211) in the discrimination between NAD(+) and NADP(+). Single mutants (D207A, I208R, F209S, and N211R) improved 5 approximately 48-fold in catalytic efficiency (k(cat)/K(m)) with NADP(+) compared with the wild type but retained substantial activity with NAD(+). The double mutants (D207A/I208R and D207A/F209S) improved by 3 orders of magnitude in k(cat)/K(m) with NADP(+), but they still preferred NAD(+) to NADP(+). The triple mutant (D207A/I208R/F209S) and quadruple mutant (D207A/I208R/F209S/N211R) showed more than 4500-fold higher values in k(cat)/K(m) with NADP(+) than the wild-type enzyme, reaching values comparable with k(cat)/K(m) with NAD(+) of the wild-type enzyme. Because most NADP(+)-dependent XDH mutants constructed in this study decreased the thermostability compared with the wild-type enzyme, we attempted to improve the thermostability of XDH mutants by the introduction of an additional zinc atom. The introduction of three cysteine residues in wild-type XDH gave an additional zinc-binding site and improved the thermostability. The introduction of this mutation in D207A/I208R/F209S and D207A/I208R/F209S/N211R mutants increased the thermostability and further increased the catalytic activity with NADP(+).
pubmed:language
eng
pubmed:journal
pubmed:citationSubset
IM
pubmed:chemical
pubmed:status
MEDLINE
pubmed:month
Mar
pubmed:issn
0021-9258
pubmed:author
pubmed:issnType
Print
pubmed:day
18
pubmed:volume
280
pubmed:owner
NLM
pubmed:authorsComplete
Y
pubmed:pagination
10340-9
pubmed:dateRevised
2008-11-21
pubmed:meshHeading
pubmed-meshheading:15623532-Amino Acid Sequence, pubmed-meshheading:15623532-Blotting, Western, pubmed-meshheading:15623532-Catalysis, pubmed-meshheading:15623532-Cloning, Molecular, pubmed-meshheading:15623532-Cysteine, pubmed-meshheading:15623532-D-Xylulose Reductase, pubmed-meshheading:15623532-Electrophoresis, Polyacrylamide Gel, pubmed-meshheading:15623532-Escherichia coli, pubmed-meshheading:15623532-Ethanol, pubmed-meshheading:15623532-Fermentation, pubmed-meshheading:15623532-Histidine, pubmed-meshheading:15623532-Hot Temperature, pubmed-meshheading:15623532-Immunoblotting, pubmed-meshheading:15623532-Kinetics, pubmed-meshheading:15623532-Ligands, pubmed-meshheading:15623532-Models, Biological, pubmed-meshheading:15623532-Molecular Sequence Data, pubmed-meshheading:15623532-Mutagenesis, Site-Directed, pubmed-meshheading:15623532-Mutation, pubmed-meshheading:15623532-NAD, pubmed-meshheading:15623532-NADP, pubmed-meshheading:15623532-Pichia, pubmed-meshheading:15623532-Protein Structure, Tertiary, pubmed-meshheading:15623532-Recombinant Proteins, pubmed-meshheading:15623532-Saccharomyces cerevisiae, pubmed-meshheading:15623532-Sequence Homology, Amino Acid, pubmed-meshheading:15623532-Spectrophotometry, pubmed-meshheading:15623532-Substrate Specificity, pubmed-meshheading:15623532-Sugar Alcohol Dehydrogenases, pubmed-meshheading:15623532-Temperature, pubmed-meshheading:15623532-Time Factors, pubmed-meshheading:15623532-Xylose, pubmed-meshheading:15623532-Zinc
pubmed:year
2005
pubmed:articleTitle
Complete reversal of coenzyme specificity of xylitol dehydrogenase and increase of thermostability by the introduction of structural zinc.
pubmed:affiliation
Institute of Advanced Energy, Kyoto University, Gokasyo, Uji, Kyoto 611-0011, Japan.
pubmed:publicationType
Journal Article, Research Support, Non-U.S. Gov't