15359419

Source:http://linkedlifedata.com/resource/pubmed/id/15359419

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Predicate	Object
rdf:type	pubmed:Citation
lifeskim:mentions	umls-concept:C0205250, umls-concept:C0332324, umls-concept:C0456962, umls-concept:C1334043, umls-concept:C1552603, umls-concept:C1706202, umls-concept:C2697616
pubmed:issue	3
pubmed:dateCreated	2004-9-10
pubmed:abstractText	Extending the single optimized spaced seed of PatternHunter(20) to multiple ones, PatternHunter II simultaneously remedies the lack of sensitivity of Blastn and the lack of speed of Smith-Waterman, for homology search. At Blastn speed, PatternHunter II approaches Smith-Waterman sensitivity, bringing homology search methodology research back to a full circle.
pubmed:language	eng
pubmed:journal	http://linkedlifedata.com/resource/pubmed/journal/101187344
pubmed:citationSubset	IM
pubmed:status	MEDLINE
pubmed:month	Sep
pubmed:issn	0219-7200
pubmed:author	pubmed-author:DoiMM, pubmed-author:KismanDerekD, pubmed-author:LiMingM, pubmed-author:TrompJohnJ
pubmed:issnType	Print
pubmed:volume	2
pubmed:owner	NLM
pubmed:authorsComplete	Y
pubmed:pagination	417-39
pubmed:dateRevised	2006-11-15
pubmed:meshHeading	pubmed-meshheading:15359419-Algorithms, pubmed-meshheading:15359419-Artificial Intelligence, pubmed-meshheading:15359419-Databases, Genetic, pubmed-meshheading:15359419-Pattern Recognition, Automated, pubmed-meshheading:15359419-Reproducibility of Results, pubmed-meshheading:15359419-Sensitivity and Specificity, pubmed-meshheading:15359419-Sequence Alignment, pubmed-meshheading:15359419-Sequence Analysis
pubmed:year	2004
pubmed:articleTitle	Patternhunter II: highly sensitive and fast homology search.
pubmed:affiliation	Department of Computer Science, University of Waterloo, Waterloo, ON, Canada N2L 3G. mli@uwaterloo.ca
pubmed:publicationType	Journal Article, Comparative Study, Evaluation Studies, Validation Studies