Statements in which the resource exists as a subject.
PredicateObject
rdf:type
lifeskim:mentions
pubmed:issue
5
pubmed:dateCreated
2004-10-27
pubmed:abstractText
It is known from experimental studies that lipid bilayers composed of unsaturated phospholipids, sphingomyelin, and cholesterol contain microdomains rich in sphingomyelin and cholesterol. These domains are similar to "rafts" isolated from cell membranes, although the latter are much smaller in lateral size. Such domain formation can be a result of very specific and subtle lipid-lipid interactions. To identify and study these interactions, we have performed two molecular dynamics simulations, of 200-ns duration, of dioleylphosphatidylcholine (DOPC), sphingomyelin (SM), and cholesterol (Chol) systems, a 1:1:1 mixture of DOPC/SM/Chol, and a 1:1 mixture of DOPC/SM. The simulations show initial stages of the onset of spontaneous phase-separated domains in the systems. On the simulation timescale cholesterol favors a position at the interface between the ordered SM region and the disordered DOPC region in the ternary system and accelerates the process of domain formation. We find that the smooth alpha-face of Chol preferentially packs next to SM molecules. Based on a comparative analysis of interaction energies, we find that Chol molecules do not show a preference for SM or DOPC. We conclude that Chol molecules assist in the process of domain formation and the process is driven by entropic factors rather than differences in interaction energies.
pubmed:grant
pubmed:commentsCorrections
http://linkedlifedata.com/resource/pubmed/commentcorrection/15339797-10201072, http://linkedlifedata.com/resource/pubmed/commentcorrection/15339797-10339572, http://linkedlifedata.com/resource/pubmed/commentcorrection/15339797-10512828, http://linkedlifedata.com/resource/pubmed/commentcorrection/15339797-10562533, http://linkedlifedata.com/resource/pubmed/commentcorrection/15339797-10590118, http://linkedlifedata.com/resource/pubmed/commentcorrection/15339797-10692323, http://linkedlifedata.com/resource/pubmed/commentcorrection/15339797-10704449, http://linkedlifedata.com/resource/pubmed/commentcorrection/15339797-10801129, http://linkedlifedata.com/resource/pubmed/commentcorrection/15339797-10811830, http://linkedlifedata.com/resource/pubmed/commentcorrection/15339797-11063882, http://linkedlifedata.com/resource/pubmed/commentcorrection/15339797-11248214, http://linkedlifedata.com/resource/pubmed/commentcorrection/15339797-11252952, http://linkedlifedata.com/resource/pubmed/commentcorrection/15339797-11457463, http://linkedlifedata.com/resource/pubmed/commentcorrection/15339797-11509362, http://linkedlifedata.com/resource/pubmed/commentcorrection/15339797-11535814, http://linkedlifedata.com/resource/pubmed/commentcorrection/15339797-11566790, http://linkedlifedata.com/resource/pubmed/commentcorrection/15339797-11606290, http://linkedlifedata.com/resource/pubmed/commentcorrection/15339797-11751313, http://linkedlifedata.com/resource/pubmed/commentcorrection/15339797-11867462, http://linkedlifedata.com/resource/pubmed/commentcorrection/15339797-11964241, http://linkedlifedata.com/resource/pubmed/commentcorrection/15339797-12324406, http://linkedlifedata.com/resource/pubmed/commentcorrection/15339797-12484857, http://linkedlifedata.com/resource/pubmed/commentcorrection/15339797-12543707, http://linkedlifedata.com/resource/pubmed/commentcorrection/15339797-12609884, http://linkedlifedata.com/resource/pubmed/commentcorrection/15339797-12668428, http://linkedlifedata.com/resource/pubmed/commentcorrection/15339797-12719238, http://linkedlifedata.com/resource/pubmed/commentcorrection/15339797-12770872, http://linkedlifedata.com/resource/pubmed/commentcorrection/15339797-14645055, http://linkedlifedata.com/resource/pubmed/commentcorrection/15339797-14747324, http://linkedlifedata.com/resource/pubmed/commentcorrection/15339797-14990465, http://linkedlifedata.com/resource/pubmed/commentcorrection/15339797-14990478, http://linkedlifedata.com/resource/pubmed/commentcorrection/15339797-15268001, http://linkedlifedata.com/resource/pubmed/commentcorrection/15339797-15298913, http://linkedlifedata.com/resource/pubmed/commentcorrection/15339797-1531449, http://linkedlifedata.com/resource/pubmed/commentcorrection/15339797-2004108, http://linkedlifedata.com/resource/pubmed/commentcorrection/15339797-7612816, http://linkedlifedata.com/resource/pubmed/commentcorrection/15339797-7734437, http://linkedlifedata.com/resource/pubmed/commentcorrection/15339797-7991596, http://linkedlifedata.com/resource/pubmed/commentcorrection/15339797-8457667, http://linkedlifedata.com/resource/pubmed/commentcorrection/15339797-9177342, http://linkedlifedata.com/resource/pubmed/commentcorrection/15339797-9585412, http://linkedlifedata.com/resource/pubmed/commentcorrection/15339797-9788908, http://linkedlifedata.com/resource/pubmed/commentcorrection/15339797-9805010, http://linkedlifedata.com/resource/pubmed/commentcorrection/15339797-9891780, http://linkedlifedata.com/resource/pubmed/commentcorrection/15339797-9924026
pubmed:language
eng
pubmed:journal
pubmed:citationSubset
IM
pubmed:chemical
pubmed:status
MEDLINE
pubmed:month
Nov
pubmed:issn
0006-3495
pubmed:author
pubmed:issnType
Print
pubmed:volume
87
pubmed:owner
NLM
pubmed:authorsComplete
Y
pubmed:pagination
3312-22
pubmed:dateRevised
2009-11-18
pubmed:meshHeading
pubmed:year
2004
pubmed:articleTitle
Simulation of the early stages of nano-domain formation in mixed bilayers of sphingomyelin, cholesterol, and dioleylphosphatidylcholine.
pubmed:affiliation
Department of Biological, Chemical, and Physical Sciences, Illinois Institute of Technology, Chicago, Illinois 60616, USA.
pubmed:publicationType
Journal Article, Comparative Study, Research Support, U.S. Gov't, P.H.S.