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PredicateObject
rdf:type
lifeskim:mentions
pubmed:issue
9
pubmed:dateCreated
2004-8-27
pubmed:databankReference
pubmed:abstractText
Rim1 and Rim2 were originally described as specific Rab3A-effector proteins involved in the regulation of secretory vesicle exocytosis. The putative Rab3A-binding domain (RBD) of Rim consists of two alpha-helical regions (named RBD1 and RBD2) separated by two zinc finger motifs. Although alternative splicing in the RBD1 of Rim is known to produce long and short forms of RBD (named Rim1 and Rim1Delta56-105, and Rim2(+40A) and Rim2, respectively), with the long form of Rim1 and short form of Rim2 being dominant in mouse brain, the physiological significance of the alternative splicing in RBD1 has never been elucidated. In the present study I discovered that alternative splicing in Rim RBD1 alters Rab3A binding affinity to Rims, and found that insertion of 40 amino acids into the RBD1 of Rim2 (i.e. Rim2(+40A)) dramatically reduced its Rab3A binding activity (more than a 50-fold decrease in affinity). Similarly, Rim1Delta56-105 exhibited higher affinity binding to Rab3A than the long form of Rim1. Expression of the short forms of the Rim RBD in PC12 cells co-localized well with endogenous Rab3A, whereas expression of the long forms of the Rim RBD in PC12 cells resulted in cytoplasimc and nuclear localization. Moreover, I found that Caenorhabditis elegans Rim/UNC-10 (ce-Rim) and Drosophila Rim (dm-Rim) do not interact with ce-Rab3 and dm-Rab3, respectively, indicating that the Rab3-effector function of Rim has not been retained during evolution. Based on these findings, I propose that the Rab3A-effector function of Rim during secretory vesicle exocytosis is limited to the short form of the mammalian Rim RBD alone.
pubmed:language
eng
pubmed:journal
pubmed:citationSubset
IM
pubmed:chemical
http://linkedlifedata.com/resource/pubmed/chemical/Caenorhabditis elegans Proteins, http://linkedlifedata.com/resource/pubmed/chemical/Carrier Proteins, http://linkedlifedata.com/resource/pubmed/chemical/Drosophila Proteins, http://linkedlifedata.com/resource/pubmed/chemical/GTP-Binding Proteins, http://linkedlifedata.com/resource/pubmed/chemical/Nerve Tissue Proteins, http://linkedlifedata.com/resource/pubmed/chemical/Rim protein, mammalian, http://linkedlifedata.com/resource/pubmed/chemical/Rim1 protein, rat, http://linkedlifedata.com/resource/pubmed/chemical/Rim2 protein, mouse, http://linkedlifedata.com/resource/pubmed/chemical/Rims1 protein, mouse, http://linkedlifedata.com/resource/pubmed/chemical/rab3 GTP-Binding Proteins, http://linkedlifedata.com/resource/pubmed/chemical/rab3A GTP-Binding Protein
pubmed:status
MEDLINE
pubmed:month
Sep
pubmed:issn
1356-9597
pubmed:author
pubmed:issnType
Print
pubmed:volume
9
pubmed:owner
NLM
pubmed:authorsComplete
Y
pubmed:pagination
831-42
pubmed:dateRevised
2010-11-18
pubmed:meshHeading
pubmed-meshheading:15330860-Alternative Splicing, pubmed-meshheading:15330860-Animals, pubmed-meshheading:15330860-Binding Sites, pubmed-meshheading:15330860-Biological Evolution, pubmed-meshheading:15330860-Caenorhabditis elegans Proteins, pubmed-meshheading:15330860-Carrier Proteins, pubmed-meshheading:15330860-Drosophila Proteins, pubmed-meshheading:15330860-GTP-Binding Proteins, pubmed-meshheading:15330860-Mice, pubmed-meshheading:15330860-Molecular Sequence Data, pubmed-meshheading:15330860-Nerve Tissue Proteins, pubmed-meshheading:15330860-PC12 Cells, pubmed-meshheading:15330860-Protein Structure, Secondary, pubmed-meshheading:15330860-Protein Structure, Tertiary, pubmed-meshheading:15330860-Rats, pubmed-meshheading:15330860-Zinc Fingers, pubmed-meshheading:15330860-rab3 GTP-Binding Proteins, pubmed-meshheading:15330860-rab3A GTP-Binding Protein
pubmed:year
2004
pubmed:articleTitle
Alternative splicing in the first alpha-helical region of the Rab-binding domain of Rim regulates Rab3A binding activity: is Rim a Rab3 effector protein during evolution?
pubmed:affiliation
Fukuda Initiative Research Unit, RIKEN (The Institute of Physical and Chemical Research), 2-1 Hirosawa, Wako, Saitama 351-0198, Japan. mnfukuda@brain.riken.go.jp
pubmed:publicationType
Journal Article, Research Support, Non-U.S. Gov't