Statements in which the resource exists as a subject.
PredicateObject
rdf:type
lifeskim:mentions
pubmed:issue
31
pubmed:dateCreated
2004-7-26
pubmed:abstractText
Collectins are a family of innate immune proteins that contain fibrillar collagen-like regions and globular carbohydrate recognition domains (CRDs). The CRDs of these proteins recognize various microbial surface-specific carbohydrate patterns, particularly hexoses. We hypothesized that collectins, such as pulmonary surfactant proteins (SPs) SP-A and SP-D and serum protein mannose-binding lectin, could recognize nucleic acids, pentose-based anionic phosphate polymers. Here we show that collectins bind DNA from a variety of origins, including bacteria, mice, and synthetic oligonucleotides. Pentoses, such as arabinose, ribose, and deoxyribose, inhibit the interaction between SP-D and mannan, one of the well-studied hexose ligands for SP-D, and biologically relevant d-forms of the pentoses are better competitors than the l-forms. In addition, DNA and RNA polymer-related compounds, such as nucleotide diphosphates and triphosphates, also inhibit the carbohydrate binding ability of SP-D, or approximately 60 kDa trimeric recombinant fragments of SP-D that are composed of the alpha-helical coiled-coil neck region and three CRDs (SP-D(n/CRD)) or SP-D(n/CRD) with eight GXY repeats (SPD(GXY)(8)(n/CRD)). Direct binding and competition studies suggest that collectins bind nucleic acid via their CRDs as well as by their collagen-like regions, and that SP-D binds DNA more effectively than do SP-A and mannose-binding lectin at physiological salt conditions. Furthermore, the SP-D(GXY)(8)(n/CRD) fragments co-localize with DNA, and the protein competes the interaction between propidium iodide, a DNA-binding dye, and apoptotic cells. In conclusion, we show that collectins are a new class of proteins that bind free DNA and the DNA present on apoptotic cells by both their globular CRDs and collagen-like regions. Collectins may therefore play an important role in decreasing the inflammation caused by DNA in lungs and other tissues.
pubmed:language
eng
pubmed:journal
pubmed:citationSubset
IM
pubmed:chemical
http://linkedlifedata.com/resource/pubmed/chemical/Carbohydrates, http://linkedlifedata.com/resource/pubmed/chemical/Collagen, http://linkedlifedata.com/resource/pubmed/chemical/Collectins, http://linkedlifedata.com/resource/pubmed/chemical/Coloring Agents, http://linkedlifedata.com/resource/pubmed/chemical/DNA, http://linkedlifedata.com/resource/pubmed/chemical/Ligands, http://linkedlifedata.com/resource/pubmed/chemical/Mannose-Binding Lectin, http://linkedlifedata.com/resource/pubmed/chemical/Oligonucleotides, http://linkedlifedata.com/resource/pubmed/chemical/Polymers, http://linkedlifedata.com/resource/pubmed/chemical/Propidium, http://linkedlifedata.com/resource/pubmed/chemical/Pulmonary Surfactant-Associated..., http://linkedlifedata.com/resource/pubmed/chemical/Pulmonary Surfactant-Associated..., http://linkedlifedata.com/resource/pubmed/chemical/RNA, http://linkedlifedata.com/resource/pubmed/chemical/Recombinant Proteins
pubmed:status
MEDLINE
pubmed:month
Jul
pubmed:issn
0021-9258
pubmed:author
pubmed:issnType
Print
pubmed:day
30
pubmed:volume
279
pubmed:owner
NLM
pubmed:authorsComplete
Y
pubmed:pagination
32728-36
pubmed:dateRevised
2006-11-15
pubmed:meshHeading
pubmed-meshheading:15145932-Animals, pubmed-meshheading:15145932-Apoptosis, pubmed-meshheading:15145932-Binding, Competitive, pubmed-meshheading:15145932-Biotinylation, pubmed-meshheading:15145932-Blotting, Western, pubmed-meshheading:15145932-Carbohydrates, pubmed-meshheading:15145932-Cell Division, pubmed-meshheading:15145932-Collagen, pubmed-meshheading:15145932-Collectins, pubmed-meshheading:15145932-Coloring Agents, pubmed-meshheading:15145932-DNA, pubmed-meshheading:15145932-Electrophoresis, Polyacrylamide Gel, pubmed-meshheading:15145932-Humans, pubmed-meshheading:15145932-Inflammation, pubmed-meshheading:15145932-Jurkat Cells, pubmed-meshheading:15145932-Ligands, pubmed-meshheading:15145932-Lung, pubmed-meshheading:15145932-Mannose-Binding Lectin, pubmed-meshheading:15145932-Mice, pubmed-meshheading:15145932-Microscopy, Electron, pubmed-meshheading:15145932-Microscopy, Fluorescence, pubmed-meshheading:15145932-Oligonucleotides, pubmed-meshheading:15145932-Plasmids, pubmed-meshheading:15145932-Polymers, pubmed-meshheading:15145932-Propidium, pubmed-meshheading:15145932-Protein Binding, pubmed-meshheading:15145932-Protein Structure, Tertiary, pubmed-meshheading:15145932-Pulmonary Surfactant-Associated Protein A, pubmed-meshheading:15145932-Pulmonary Surfactant-Associated Protein D, pubmed-meshheading:15145932-RNA, pubmed-meshheading:15145932-Recombinant Proteins, pubmed-meshheading:15145932-Surface Plasmon Resonance, pubmed-meshheading:15145932-Time Factors
pubmed:year
2004
pubmed:articleTitle
Nucleic acid is a novel ligand for innate, immune pattern recognition collectins surfactant proteins A and D and mannose-binding lectin.
pubmed:affiliation
MRC Immunochemistry Unit, Department of Biochemistry, The University of Oxford, Oxford OX1 3QU, United Kingdom. Nades@bioch.ox.ac.uk
pubmed:publicationType
Journal Article, Research Support, Non-U.S. Gov't