Source:http://linkedlifedata.com/resource/pubmed/id/14871862
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rdf:type | |
lifeskim:mentions | |
pubmed:issue |
8
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pubmed:dateCreated |
2004-5-24
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pubmed:abstractText |
Serial Analysis of Gene Expression (SAGE) is a powerful technology for measuring global gene expression, through rapid generation of large numbers of transcript tags. Beyond their intrinsic value in differential gene expression analysis, SAGE tag collections afford abundant information on the size and shape of the sample transcriptome and can accelerate novel gene discovery. These latter SAGE applications are facilitated by the enhanced method of Long SAGE. A characteristic of sequencing-based methods, such as SAGE and Long SAGE is the unavoidable occurrence of artifact sequences resulting from sequencing errors. By virtue of their low-random incidence, such tag errors have minimal impact on differential expression analysis. However, to fully exploit the value of large SAGE tag datasets, it is desirable to account for and correct tag artifacts.
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pubmed:language |
eng
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pubmed:journal | |
pubmed:citationSubset |
IM
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pubmed:status |
MEDLINE
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pubmed:month |
May
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pubmed:issn |
1367-4803
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pubmed:author | |
pubmed:issnType |
Print
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pubmed:day |
22
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pubmed:volume |
20
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pubmed:owner |
NLM
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pubmed:authorsComplete |
Y
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pubmed:pagination |
1254-63
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pubmed:dateRevised |
2008-11-21
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pubmed:meshHeading |
pubmed-meshheading:14871862-Algorithms,
pubmed-meshheading:14871862-Artifacts,
pubmed-meshheading:14871862-Brain Neoplasms,
pubmed-meshheading:14871862-Expressed Sequence Tags,
pubmed-meshheading:14871862-Gene Expression Profiling,
pubmed-meshheading:14871862-Gene Library,
pubmed-meshheading:14871862-Genetic Variation,
pubmed-meshheading:14871862-Glioma,
pubmed-meshheading:14871862-Humans,
pubmed-meshheading:14871862-Models, Genetic,
pubmed-meshheading:14871862-Models, Statistical,
pubmed-meshheading:14871862-Polymerase Chain Reaction,
pubmed-meshheading:14871862-Quality Control,
pubmed-meshheading:14871862-Reproducibility of Results,
pubmed-meshheading:14871862-Sensitivity and Specificity,
pubmed-meshheading:14871862-Sequence Alignment,
pubmed-meshheading:14871862-Sequence Analysis, DNA
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pubmed:year |
2004
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pubmed:articleTitle |
Correction of sequence-based artifacts in serial analysis of gene expression.
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pubmed:affiliation |
Genzyme Corporation, Framingham, MA 01701-9322, USA. slava.akmaev@genzyme.com
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pubmed:publicationType |
Journal Article,
Comparative Study,
Evaluation Studies,
Validation Studies
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